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GEO accession:
Sample GSM128606
Query DataSets for GSM128606
Status
Public on Sep 28, 2010
Title
176_p_2
Sample type
RNA
Source name
biopsy, prior to treatment, carbon-ion radiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, carbon-ion radiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Sep 28, 2010
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE20167
Gene expression profiles of cervical cancers for novel molecular classification
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
13697.4004
232.3211
G
118.9772
13786.4004
7438.0000
14332.3369
142
13.4461898803711
115.874294538596
90.6000
89.0000
17.9162
124
1002
1
512.7381
8.6965
G
5.8841
594.7381
658.0000
262.4402
84
10.3417663574219
101.075244990267
82.7627
82.0000
12.7168
183
1003
1
12.5714
0.2132
L
0.9457
96.5714
100.0000
14.0149
35
6.67558097839355
102.120708819463
84.4400
84.0000
12.0805
181
1004
1
10.3590
0.1757
L
0.9456
92.3590
94.0000
12.4848
39
7.04672574996948
97.6685136069871
82.2431
82.0000
10.4457
187
1005
1
6.3208
0.1072
L
0.8926
84.3208
84.0000
12.7941
53
8.21472454071045
94.4681110217775
77.2750
78.0000
10.9787
124
1006
1
21.4324
0.3635
G
1.0726
98.4324
96.0000
12.1778
37
6.86366271972656
91.7738629952577
77.4725
77.0000
9.8492
188
1007
1
3.5000
0.0594
L
0.8631
81.5000
81.0000
11.4287
82
10.2179079055786
94.4222929302492
77.1298
78.0000
10.9482
216
1008
1
14007.1748
237.5752
G
132.9238
14087.1748
5349.0000
15663.2568
168
14.6254653930664
105.979304112729
82.6833
80.0000
17.3195
124
1009
1
403.0110
6.8355
G
5.2924
478.0110
547.0000
193.8549
91
10.7640514373779
90.3198142755448
74.8528
75.0000
10.2132
169
1010
1
393.7561
6.6785
G
5.2965
468.7561
534.0000
213.1703
82
10.2179079055786
88.5033642526292
74.1209
75.0000
9.0022
188
1011
1
97.6364
1.6560
G
1.9252
171.6364
179.0000
35.6388
77
9.90148735046387
89.1533046019716
74.5934
74.0000
10.1022
188
1012
1
144.4189
2.4495
G
2.4429
219.4189
232.0000
73.0316
74
9.70668506622314
89.8197184962562
75.7143
75.0000
9.8798
188
1013
1
35.7936
0.6071
G
1.2446
109.7936
112.0000
14.5058
63
8.95623207092285
88.2125600644391
74.5330
74.0000
9.4750
188
1014
1
28.4655
0.4828
G
1.1665
102.4655
102.0000
12.0548
58
8.59348011016846
87.8406826601262
74.4835
74.0000
9.2271
188
1015
1
13849.5186
234.9012
G
134.6152
13925.5186
5449.0000
14785.4336
139
13.303394317627
103.446812991625
79.0667
76.0000
18.2979
124
1016
1
27.6200
0.4685
G
1.1369
101.6200
100.0000
11.0071
50
7.97884559631348
89.3852732727191
75.2707
74.0000
10.2568
187
1017
1
10.4032
0.1764
L
0.9651
83.4032
84.0000
15.9894
62
8.88486671447754
86.4226457852628
72.8983
73.0000
8.9484
122
1018
1
11.4054
0.1934
L
0.9488
84.4054
83.0000
11.6745
37
6.86366271972656
88.964844413828
73.2965
73.0000
10.6432
178
1019
1
10.1412
0.1720
L
0.9355
80.1412
79.0000
10.9578
85
10.4031419754028
85.6624535171984
70.8732
70.0000
10.4416
213
1020
1
52.8448
0.8963
G
1.3800
129.8448
131.0000
24.7671
58
8.59348011016846
94.0935886247749
78.2444
77.0000
11.3957
186
Total number of rows:
54359
Table truncated, full table size
6532 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128606.TXT.gz
2.5 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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