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Sample GSM128606 Query DataSets for GSM128606
Status Public on Sep 28, 2010
Title 176_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 13697.4004 232.3211 G 118.9772 13786.4004 7438.0000 14332.3369 142 13.4461898803711 115.874294538596 90.6000 89.0000 17.9162 124
1002 1 512.7381 8.6965 G 5.8841 594.7381 658.0000 262.4402 84 10.3417663574219 101.075244990267 82.7627 82.0000 12.7168 183
1003 1 12.5714 0.2132 L 0.9457 96.5714 100.0000 14.0149 35 6.67558097839355 102.120708819463 84.4400 84.0000 12.0805 181
1004 1 10.3590 0.1757 L 0.9456 92.3590 94.0000 12.4848 39 7.04672574996948 97.6685136069871 82.2431 82.0000 10.4457 187
1005 1 6.3208 0.1072 L 0.8926 84.3208 84.0000 12.7941 53 8.21472454071045 94.4681110217775 77.2750 78.0000 10.9787 124
1006 1 21.4324 0.3635 G 1.0726 98.4324 96.0000 12.1778 37 6.86366271972656 91.7738629952577 77.4725 77.0000 9.8492 188
1007 1 3.5000 0.0594 L 0.8631 81.5000 81.0000 11.4287 82 10.2179079055786 94.4222929302492 77.1298 78.0000 10.9482 216
1008 1 14007.1748 237.5752 G 132.9238 14087.1748 5349.0000 15663.2568 168 14.6254653930664 105.979304112729 82.6833 80.0000 17.3195 124
1009 1 403.0110 6.8355 G 5.2924 478.0110 547.0000 193.8549 91 10.7640514373779 90.3198142755448 74.8528 75.0000 10.2132 169
1010 1 393.7561 6.6785 G 5.2965 468.7561 534.0000 213.1703 82 10.2179079055786 88.5033642526292 74.1209 75.0000 9.0022 188
1011 1 97.6364 1.6560 G 1.9252 171.6364 179.0000 35.6388 77 9.90148735046387 89.1533046019716 74.5934 74.0000 10.1022 188
1012 1 144.4189 2.4495 G 2.4429 219.4189 232.0000 73.0316 74 9.70668506622314 89.8197184962562 75.7143 75.0000 9.8798 188
1013 1 35.7936 0.6071 G 1.2446 109.7936 112.0000 14.5058 63 8.95623207092285 88.2125600644391 74.5330 74.0000 9.4750 188
1014 1 28.4655 0.4828 G 1.1665 102.4655 102.0000 12.0548 58 8.59348011016846 87.8406826601262 74.4835 74.0000 9.2271 188
1015 1 13849.5186 234.9012 G 134.6152 13925.5186 5449.0000 14785.4336 139 13.303394317627 103.446812991625 79.0667 76.0000 18.2979 124
1016 1 27.6200 0.4685 G 1.1369 101.6200 100.0000 11.0071 50 7.97884559631348 89.3852732727191 75.2707 74.0000 10.2568 187
1017 1 10.4032 0.1764 L 0.9651 83.4032 84.0000 15.9894 62 8.88486671447754 86.4226457852628 72.8983 73.0000 8.9484 122
1018 1 11.4054 0.1934 L 0.9488 84.4054 83.0000 11.6745 37 6.86366271972656 88.964844413828 73.2965 73.0000 10.6432 178
1019 1 10.1412 0.1720 L 0.9355 80.1412 79.0000 10.9578 85 10.4031419754028 85.6624535171984 70.8732 70.0000 10.4416 213
1020 1 52.8448 0.8963 G 1.3800 129.8448 131.0000 24.7671 58 8.59348011016846 94.0935886247749 78.2444 77.0000 11.3957 186

Total number of rows: 54359

Table truncated, full table size 6532 Kbytes.




Supplementary file Size Download File type/resource
GSM128606.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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