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Sample GSM128607 Query DataSets for GSM128607
Status Public on Mar 23, 2015
Title 176_d_1
Sample type RNA
 
Source name biopsy, during treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 13265.1357 192.9062 G 121.4356 13354.1357 6413.0000 13950.1250 217 16.6220626831055 109.968897648604 89.4747 89.0000 13.9793 225
1002 1 528.0965 7.6798 G 5.4805 622.0965 674.0000 283.2769 116 12.1530151367188 113.511608170624 94.7895 94.0000 13.0077 118
1003 1 1.2069 0.0176 L 0.8179 100.2069 97.0000 15.8970 29 6.07650756835938 122.523364334775 100.7747 99.0000 15.6822 188
1004 1 2.9070 0.0423 L 0.8606 100.9070 99.0000 18.3148 86 10.4641580581665 117.253488522694 97.6303 98.0000 12.8357 171
1005 1 3.0612 0.0445 L 0.8543 92.0612 92.0000 12.4939 49 7.89865398406982 107.768262358423 89.3656 89.0000 12.5122 95
1006 1 23.6200 0.3435 G 1.0422 114.6200 115.0000 15.9498 50 7.97884559631348 109.983777802867 92.1944 91.0000 12.6558 150
1007 1 8.1591 0.1187 L 0.8792 90.1591 88.0000 14.7686 88 10.5851345062256 102.543211103492 82.5820 82.0000 13.6955 195
1008 1 13090.7871 190.3707 G 131.8854 13171.7871 3953.0000 14273.6787 225 16.925687789917 99.8729689623408 81.6784 81.0000 12.5820 235
1009 1 354.0096 5.1481 G 4.7300 428.0096 468.0000 163.0017 106 11.617374420166 90.4882534288661 75.5056 74.0000 10.9922 186
1010 1 441.1500 6.4154 G 5.8015 515.1500 540.0000 215.8880 102 11.396071434021 88.7957011076738 75.2541 74.0000 9.8638 187
1011 1 89.2469 1.2979 G 1.8027 165.2469 163.0000 32.1668 81 10.1554126739502 91.6660384068608 76.3149 76.0000 10.4440 187
1012 1 117.2857 1.7056 G 2.1463 192.2857 196.0000 49.0989 84 10.3417663574219 89.5880294660118 75.0000 75.0000 9.7253 188
1013 1 35.3380 0.5139 G 1.2304 108.3380 109.0000 16.3947 71 9.50789165496826 88.049103368256 73.5275 73.0000 10.0327 188
1014 1 23.0139 0.3347 G 1.1012 98.0139 98.0000 14.6596 72 9.57461452484131 89.0068788173929 75.0571 75.0000 9.3379 181
1015 1 14454.6787 210.2049 G 154.4063 14532.6787 6600.0000 15143.5186 247 17.7338714599609 94.1197196766692 78.0335 78.0000 10.7465 217
1016 1 27.9219 0.4060 G 1.1351 106.9219 107.0000 13.0675 64 9.02703380584717 94.1942444124113 77.9669 79.0000 10.1295 187
1017 1 12.7031 0.1847 L 0.9616 87.7031 89.0000 12.5918 64 9.02703380584717 91.2027327083583 76.3896 75.0000 10.8018 79
1018 1 6.3158 0.0918 L 0.9150 80.3158 80.0000 12.2288 95 10.9980792999268 87.7766098769287 73.8496 74.0000 9.1844 137
1019 1 9.4032 0.1367 L 0.9443 85.4032 86.0000 10.4980 62 8.88486671447754 90.4455304678551 76.2647 76.0000 9.6304 106
1020 1 42.8316 0.6229 G 1.1371 130.8316 127.0000 24.9537 95 10.9980792999268 115.054274320676 89.2222 88.0000 18.0362 103

Total number of rows: 54359

Table truncated, full table size 6573 Kbytes.




Supplementary file Size Download File type/resource
GSM128607.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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