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Sample GSM128608 Query DataSets for GSM128608
Status Public on Mar 23, 2015
Title 176_d_2
Sample type RNA
 
Source name biopsy, during treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 15444.4150 181.4264 G 168.2127 15519.4150 9708.0000 15637.1436 137 13.2073392868042 92.2606410201751 76.2198 75.0000 11.5071 188
1002 1 721.2527 8.4726 G 9.0518 796.2527 923.0000 432.0141 91 10.7640514373779 87.9663369993897 75.0226 75.0000 8.6442 183
1003 1 1.1895 0.0140 L 0.8569 78.1895 77.0000 13.0677 95 10.9980792999268 91.2462700753876 75.9786 77.0000 9.4975 193
1004 1 22.5714 0.2651 G 1.0891 96.5714 97.0000 9.9382 42 7.3127326965332 88.6713771999695 74.9080 74.0000 9.7809 169
1005 1 7.5263 0.0884 L 0.9062 82.5263 83.0000 14.1081 38 6.95579624176025 91.0646207013761 74.3721 75.0000 10.7098 178
1006 1 28.0408 0.3294 G 1.1526 101.0408 100.0000 13.2202 49 7.89865398406982 87.6641244238583 74.0714 73.0000 9.7761 188
1007 1 14.6471 0.1721 L 0.9893 90.6471 89.0000 11.2456 34 6.57952451705933 91.6280490034851 76.2967 76.0000 10.4187 188
1008 1 14864.9170 174.6190 G 161.0433 14942.9170 5787.0000 16129.2080 170 14.7122640609741 92.7881740390687 78.5667 78.0000 9.8588 124
1009 1 406.8495 4.7793 G 5.3390 481.8495 534.0000 201.2305 93 10.8816947937012 90.2504666980925 75.2373 75.0000 10.1670 183
1010 1 519.7045 6.1050 G 6.5405 594.7045 703.0000 276.6063 88 10.5851345062256 90.9258239645204 75.4138 75.0000 10.6172 180
1011 1 108.3457 1.2727 G 2.0862 181.3457 192.0000 40.0053 81 10.1554126739502 86.9258950567867 74.6209 73.0000 9.2839 188
1012 1 105.1410 1.2351 G 1.9460 181.1410 191.0000 48.4923 78 9.96557521820068 93.0815783966986 74.3571 76.0000 11.3877 188
1013 1 46.6757 0.5483 G 1.3676 120.6757 119.0000 16.6540 74 9.70668506622314 88.2410845684938 74.5549 74.0000 9.4941 188
1014 1 25.2813 0.2970 G 1.1203 99.2813 99.0000 12.7873 64 9.02703380584717 88.6204953749469 74.4341 74.0000 9.7470 188
1015 1 15735.7666 184.8489 G 162.3194 15815.7666 11796.0000 15808.7314 126 12.6660251617432 97.436057774155 79.6813 80.0000 11.6240 188
1016 1 28.9057 0.3396 G 1.1704 104.9057 104.0000 14.4982 53 8.21472454071045 89.6342039271447 76.3352 76.0000 9.0895 188
1017 1 14.3043 0.1680 G 1.0058 89.3043 90.0000 11.8594 46 7.65303993225098 88.7921223183596 75.1602 75.0000 9.1947 187
1018 1 6.0909 0.0716 L 0.8926 81.0909 80.0000 10.7361 88 10.5851345062256 90.8456621067987 74.5208 75.0000 10.5638 200
1019 1 5.0556 0.0594 L 0.8723 77.0556 78.0000 12.2110 36 6.7702751159668 88.3346163073239 73.7000 72.0000 10.8897 176
1020 1 41.7018 0.4899 G 1.2856 117.7018 119.0000 14.1755 57 8.51907634735107 91.550841743349 75.7836 76.0000 10.3672 177

Total number of rows: 54359

Table truncated, full table size 6567 Kbytes.




Supplementary file Size Download File type/resource
GSM128608.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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