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Sample GSM128609 Query DataSets for GSM128609
Status Public on Sep 28, 2010
Title 1244_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 15626.5029 166.9520 G 155.9896 15710.5029 7463.0000 15900.7588 179 15.0966844558716 100.715070644103 82.3417 84.0000 11.1434 124
1002 1 1278.9208 13.6639 G 14.1128 1359.9208 1560.0000 725.5542 103 11.4517974853516 96.3605344772419 79.9066 81.0000 10.2404 188
1003 1 2.0345 0.0217 L 0.8408 84.0345 84.0000 9.7891 29 6.07650756835938 99.9478593580236 82.8407 82.0000 11.9652 188
1004 1 18.4118 0.1967 G 1.0215 101.4118 103.0000 11.7876 51 8.0582389831543 99.2769225239456 83.3352 83.0000 10.8513 188
1005 1 9.8333 0.1051 L 0.9440 92.8333 97.0000 11.3228 30 6.18038702011108 98.3450609559005 83.3779 83.0000 10.2300 178
1006 1 19.8781 0.2124 G 1.0385 97.8781 95.0000 13.2705 41 7.22515201568604 94.2502313896222 79.3081 78.0000 10.8335 178
1007 1 7.3407 0.0784 L 0.9226 86.3407 87.0000 10.2381 91 10.7640514373779 93.5809864211703 79.4388 79.0000 9.7207 204
1008 1 16084.6338 171.8466 G 157.3775 16170.6338 7719.0000 16469.6738 174 14.8843431472778 102.750576382637 85.3833 86.0000 11.1671 124
1009 1 454.6022 4.8569 G 5.4888 536.6022 583.0000 226.2762 93 10.8816947937012 97.7626616717492 82.0824 82.0000 10.5084 188
1010 1 770.7333 8.2344 G 8.9113 849.7333 944.0000 399.7243 90 10.7047443389893 95.354111235799 79.2167 79.0000 10.9027 186
1011 1 76.8101 0.8206 G 1.6374 153.8101 157.0000 26.3372 79 10.0292530059814 93.934416192227 77.1978 77.0000 11.2896 188
1012 1 80.9620 0.8650 G 1.7189 158.9620 163.0000 32.7679 79 10.0292530059814 92.478206624598 78.2692 78.0000 9.6521 188
1013 1 41.8451 0.4471 G 1.3182 119.8451 119.0000 14.1627 71 9.50789165496826 90.9155563272526 77.2198 78.0000 8.6104 188
1014 1 43.7273 0.4672 G 1.3302 121.7273 124.0000 16.5338 77 9.90148735046387 91.5116630229195 78.2667 78.0000 9.0078 186
1015 1 16050.2979 171.4798 G 162.5596 16133.2979 6452.0000 17173.5195 222 16.8124713897705 99.245441570638 82.8810 83.0000 10.8303 218
1016 1 93.8571 1.0028 G 1.7775 173.8571 172.0000 29.9731 84 10.3417663574219 97.8096048501757 81.1167 80.0000 11.8731 186
1017 1 19.3281 0.2065 G 1.0496 99.3281 100.0000 14.7140 64 9.02703380584717 94.6317929546834 78.9489 80.0000 9.7545 182
1018 1 14.0682 0.1503 L 0.9884 90.0682 92.0000 14.8453 44 7.48482084274292 91.1256778824931 77.1160 76.0000 10.0838 187
1019 1 10.4474 0.1116 L 0.9401 88.4474 87.0000 12.1367 38 6.95579624176025 94.0862596765866 79.0549 78.0000 10.7242 188
1020 1 30.5676 0.3266 G 1.1482 108.5676 106.0000 14.7987 74 9.70668506622314 94.5551342057196 79.6471 78.0000 11.0368 159

Total number of rows: 54359

Table truncated, full table size 6603 Kbytes.




Supplementary file Size Download File type/resource
GSM128609.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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