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GEO accession:
Sample GSM128610
Query DataSets for GSM128610
Status
Public on Sep 28, 2010
Title
1244_p_2
Sample type
RNA
Source name
biopsy, prior to treatment, carbon-ion radiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, carbon-ion radiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Sep 28, 2010
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE20167
Gene expression profiles of cervical cancers for novel molecular classification
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
16126.6377
271.3819
G
147.6049
16204.6377
12741.0000
14981.7646
162
14.3619222640991
109.783836522237
82.2417
78.0000
21.1892
124
1002
1
764.6354
12.8674
G
9.7448
836.6354
975.0000
447.1051
96
11.0558128356934
85.8541435624941
73.2486
72.0000
9.2361
183
1003
1
11.0000
0.1851
L
0.9538
84.0000
87.0000
10.9716
32
6.38307666778564
88.0657650829962
73.7039
73.0000
10.0438
185
1004
1
21.0000
0.3534
G
1.0706
93.0000
92.0000
10.8606
42
7.3127326965332
86.8695637940328
72.9116
72.0000
9.9130
187
1005
1
13.9130
0.2341
L
0.9995
85.9130
86.0000
9.5413
46
7.65303993225098
85.9529601016708
71.7527
72.0000
9.3020
188
1006
1
19.7586
0.3325
G
1.0709
92.7586
93.0000
8.9853
58
8.59348011016846
86.6158371873319
71.9286
73.0000
9.0772
188
1007
1
18.2558
0.3072
G
1.0446
90.2558
89.0000
9.0273
43
7.3992772102356
86.4059001375427
72.6593
72.0000
9.6039
188
1008
1
13408.8760
225.6469
G
151.3282
13482.8760
4384.0000
15057.1074
195
15.7569580078125
89.0969066027685
74.2212
74.0000
10.0646
234
1009
1
348.5425
5.8653
G
4.8063
421.5425
459.0000
153.2242
94
10.9400415420532
87.707063323309
73.3430
73.0000
9.8047
178
1010
1
479.6630
8.0719
G
6.4049
551.6630
614.0000
235.8788
92
10.8230323791504
86.1318703964331
71.2308
72.0000
9.4212
188
1011
1
70.8875
1.1929
G
1.6443
143.8875
148.0000
26.1658
80
10.0925302505493
87.5064665126853
72.7912
73.0000
9.6710
188
1012
1
62.6471
1.0542
G
1.5615
135.6471
136.0000
20.9634
68
9.30485343933105
86.8692428201702
73.9451
73.0000
9.2462
188
1013
1
43.6667
0.7348
G
1.3308
117.6667
116.0000
15.7365
72
9.57461452484131
88.4161273115459
74.5659
74.0000
9.6108
188
1014
1
44.5205
0.7492
G
1.3317
119.5205
118.0000
18.9398
73
9.64087581634521
89.7492391181361
74.4286
75.0000
9.8328
188
1015
1
13138.3184
221.0940
G
146.7762
13213.3184
4677.0000
14442.8174
156
14.093451499939
90.0236042333178
76.4583
75.0000
10.0157
124
1016
1
63.4179
1.0672
G
1.5424
137.4179
138.0000
26.0643
67
9.23618125915527
89.0907441209899
73.6593
74.0000
10.0605
188
1017
1
22.3462
0.3760
G
1.0742
95.3462
94.0000
11.8076
52
8.1368579864502
88.763683644882
72.7473
73.0000
10.5091
188
1018
1
10.4063
0.1751
L
0.9421
84.4063
86.0000
16.6693
32
6.38307666778564
89.5939999621657
73.2967
74.0000
10.3960
188
1019
1
13.2903
0.2237
L
0.9787
86.2903
88.0000
12.5034
31
6.2825493812561
88.1677762917815
72.4780
73.0000
10.1119
188
1020
1
20.4340
0.3439
G
1.0734
95.4340
94.0000
11.8807
53
8.21472454071045
88.9055954377025
74.7143
75.0000
9.2704
188
Total number of rows:
54359
Table truncated, full table size
6543 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128610.TXT.gz
2.5 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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