NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM128610 Query DataSets for GSM128610
Status Public on Sep 28, 2010
Title 1244_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 16126.6377 271.3819 G 147.6049 16204.6377 12741.0000 14981.7646 162 14.3619222640991 109.783836522237 82.2417 78.0000 21.1892 124
1002 1 764.6354 12.8674 G 9.7448 836.6354 975.0000 447.1051 96 11.0558128356934 85.8541435624941 73.2486 72.0000 9.2361 183
1003 1 11.0000 0.1851 L 0.9538 84.0000 87.0000 10.9716 32 6.38307666778564 88.0657650829962 73.7039 73.0000 10.0438 185
1004 1 21.0000 0.3534 G 1.0706 93.0000 92.0000 10.8606 42 7.3127326965332 86.8695637940328 72.9116 72.0000 9.9130 187
1005 1 13.9130 0.2341 L 0.9995 85.9130 86.0000 9.5413 46 7.65303993225098 85.9529601016708 71.7527 72.0000 9.3020 188
1006 1 19.7586 0.3325 G 1.0709 92.7586 93.0000 8.9853 58 8.59348011016846 86.6158371873319 71.9286 73.0000 9.0772 188
1007 1 18.2558 0.3072 G 1.0446 90.2558 89.0000 9.0273 43 7.3992772102356 86.4059001375427 72.6593 72.0000 9.6039 188
1008 1 13408.8760 225.6469 G 151.3282 13482.8760 4384.0000 15057.1074 195 15.7569580078125 89.0969066027685 74.2212 74.0000 10.0646 234
1009 1 348.5425 5.8653 G 4.8063 421.5425 459.0000 153.2242 94 10.9400415420532 87.707063323309 73.3430 73.0000 9.8047 178
1010 1 479.6630 8.0719 G 6.4049 551.6630 614.0000 235.8788 92 10.8230323791504 86.1318703964331 71.2308 72.0000 9.4212 188
1011 1 70.8875 1.1929 G 1.6443 143.8875 148.0000 26.1658 80 10.0925302505493 87.5064665126853 72.7912 73.0000 9.6710 188
1012 1 62.6471 1.0542 G 1.5615 135.6471 136.0000 20.9634 68 9.30485343933105 86.8692428201702 73.9451 73.0000 9.2462 188
1013 1 43.6667 0.7348 G 1.3308 117.6667 116.0000 15.7365 72 9.57461452484131 88.4161273115459 74.5659 74.0000 9.6108 188
1014 1 44.5205 0.7492 G 1.3317 119.5205 118.0000 18.9398 73 9.64087581634521 89.7492391181361 74.4286 75.0000 9.8328 188
1015 1 13138.3184 221.0940 G 146.7762 13213.3184 4677.0000 14442.8174 156 14.093451499939 90.0236042333178 76.4583 75.0000 10.0157 124
1016 1 63.4179 1.0672 G 1.5424 137.4179 138.0000 26.0643 67 9.23618125915527 89.0907441209899 73.6593 74.0000 10.0605 188
1017 1 22.3462 0.3760 G 1.0742 95.3462 94.0000 11.8076 52 8.1368579864502 88.763683644882 72.7473 73.0000 10.5091 188
1018 1 10.4063 0.1751 L 0.9421 84.4063 86.0000 16.6693 32 6.38307666778564 89.5939999621657 73.2967 74.0000 10.3960 188
1019 1 13.2903 0.2237 L 0.9787 86.2903 88.0000 12.5034 31 6.2825493812561 88.1677762917815 72.4780 73.0000 10.1119 188
1020 1 20.4340 0.3439 G 1.0734 95.4340 94.0000 11.8807 53 8.21472454071045 88.9055954377025 74.7143 75.0000 9.2704 188

Total number of rows: 54359

Table truncated, full table size 6543 Kbytes.




Supplementary file Size Download File type/resource
GSM128610.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap