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Sample GSM128613 Query DataSets for GSM128613
Status Public on Sep 28, 2010
Title 1586_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 17746.5859 306.1816 G 176.5040 17831.5859 6638.0000 19711.8672 159 14.2283201217651 101.026535948334 84.6667 85.0000 10.6844 124
1002 1 523.2247 9.0272 G 6.2115 604.2247 664.0000 253.1882 89 10.6451082229614 97.2744973918651 82.2313 81.0000 10.8497 153
1003 1 0.4000 0.0069 L 0.8419 82.4000 80.0000 12.6139 85 10.4031419754028 97.8704782493392 81.8756 82.0000 10.5803 201
1004 1 1.0690 0.0184 L 0.8405 83.0690 82.0000 11.6113 29 6.07650756835938 98.8380497145491 81.3626 82.0000 11.2254 177
1005 1 1.6200 0.0279 L 0.8592 83.6200 84.0000 11.0705 50 7.97884559631348 97.3224597189138 82.0297 82.0000 10.2150 105
1006 1 11.4722 0.1979 L 0.9294 95.4722 96.0000 16.4578 36 6.7702751159668 102.722373175946 83.1550 84.0000 12.4816 133
1007 1 -0.2706 -0.0047 L 0.8126 83.7294 83.0000 15.0774 85 10.4031419754028 103.044398074651 84.1146 84.0000 12.6963 200
1008 1 21933.0488 378.4106 G 196.3052 22021.0488 13689.0000 21618.6211 145 13.5874843597412 112.177618490147 89.6667 88.0000 16.1184 109
1009 1 264.1591 4.5575 G 3.6187 344.1591 369.0000 116.7090 88 10.5851345062256 95.1055867228446 80.5000 80.0000 10.0704 178
1010 1 398.8193 6.8808 G 4.7734 481.8193 533.0000 193.8666 83 10.2800235748291 100.939061651202 83.0275 83.0000 11.9594 188
1011 1 46.6620 0.8051 G 1.3041 127.6620 127.0000 16.5529 71 9.50789165496826 97.8907799744548 81.2033 81.0000 11.2605 188
1012 1 39.4091 0.6799 G 1.2542 121.4091 121.0000 17.4077 66 9.16699600219727 96.8032592782128 81.4011 82.0000 9.8688 188
1013 1 19.3019 0.3330 G 1.0062 101.3019 103.0000 16.0431 53 8.21472454071045 100.675447898631 82.8889 82.0000 12.4503 186
1014 1 6.0345 0.1041 L 0.8967 88.0345 89.0000 14.9869 87 10.5248203277588 98.1739170432172 83.0367 82.0000 10.7826 226
1015 1 20733.7441 357.7190 G 194.9614 20821.7441 10113.0000 21898.6230 174 14.8843431472778 106.799326821053 87.2917 88.0000 12.5329 124
1016 1 50.6818 0.8744 G 1.3428 132.6818 129.0000 26.2212 66 9.16699600219727 98.8109042720594 82.5989 82.0000 11.2073 188
1017 1 15.7692 0.2721 L 0.9735 102.7692 105.0000 14.5028 39 7.04672574996948 105.563991336093 86.9286 87.0000 12.3760 188
1018 1 6.2222 0.1074 L 0.8880 93.2222 90.0000 15.1109 36 6.7702751159668 104.983050037415 88.4458 87.0000 11.9887 172
1019 1 13.7941 0.2380 L 0.9574 100.7941 100.0000 17.9309 34 6.57952451705933 105.280616222087 88.6044 87.0000 12.1871 188
1020 1 58.5517 1.0102 G 1.2821 157.5517 142.0000 55.8215 58 8.59348011016846 122.889383349249 99.5110 99.0000 15.9263 188

Total number of rows: 54359

Table truncated, full table size 6570 Kbytes.




Supplementary file Size Download File type/resource
GSM128613.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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