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Sample GSM128614 Query DataSets for GSM128614
Status Public on Sep 28, 2010
Title 1586_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 13872.7910 153.6984 G 135.8164 13954.7910 6984.0000 14397.7529 179 15.0966844558716 102.7474502759 82.0500 82.0000 13.8316 124
1002 1 823.7087 9.1260 G 9.1816 903.7087 980.0000 446.6353 105 11.562445640564 98.4258524375583 80.4833 80.0000 12.2839 186
1003 1 -0.0323 -0.0004 L 0.8153 78.9677 78.0000 12.9428 31 6.2825493812561 96.8547071430389 80.3556 79.0000 11.9031 186
1004 1 9.0761 0.1006 L 0.9217 87.0761 87.0000 14.3028 92 10.8230323791504 94.4766627058185 79.5658 78.0000 10.9844 236
1005 1 5.3804 0.0596 L 0.8739 84.3804 79.0000 26.3050 92 10.8230323791504 96.5520621962604 80.0455 79.0000 11.7014 206
1006 1 13.8352 0.1533 L 0.9468 95.8352 93.0000 18.8168 91 10.7640514373779 101.221375552867 82.6387 82.0000 12.8142 161
1007 1 9.6286 0.1067 L 0.9013 90.6286 86.0000 21.0538 35 6.67558097839355 100.558420397718 81.0500 81.0000 13.0389 186
1008 1 13018.9697 144.2388 G 130.1889 13100.9697 4326.0000 14650.8105 203 16.0769290924072 100.630475246362 82.2456 82.0000 12.4203 236
1009 1 332.3626 3.6823 G 4.1260 416.3626 439.0000 146.1137 91 10.7640514373779 100.911282858185 83.8778 84.0000 11.2742 186
1010 1 633.8804 7.0228 G 7.0625 718.8804 817.0000 332.0836 92 10.8230323791504 101.788427877443 85.5864 85.0000 11.1923 168
1011 1 71.0122 0.7868 G 1.5250 152.0122 147.0000 37.7322 82 10.2179079055786 99.6827143213942 81.7747 81.0000 12.4551 188
1012 1 67.7101 0.7502 G 1.4652 151.7101 145.0000 30.9497 69 9.37302112579346 103.540503086802 84.5934 84.0000 13.0270 188
1013 1 23.6250 0.2617 G 1.0303 105.6250 108.0000 19.0237 48 7.81764030456543 102.517507470309 84.0440 82.0000 13.6783 188
1014 1 9.7377 0.1079 L 0.8986 93.7377 89.0000 26.9942 61 8.81292343139648 104.317340738978 84.0500 84.0000 13.5449 124
1015 1 15528.8086 172.0456 G 139.7927 15616.8086 8498.0000 15865.3838 213 16.4681510925293 111.714041928929 89.1514 88.0000 15.8094 226
1016 1 41.8904 0.4641 G 1.1312 130.8904 128.0000 18.6192 73 9.64087581634521 115.71444701766 91.4833 89.0000 17.8096 186
1017 1 28.4805 0.3155 G 1.0768 114.4805 109.0000 28.2878 77 9.90148735046387 106.317941643893 86.7417 86.0000 13.5453 124
1018 1 27.9565 0.3097 G 1.0901 118.9565 113.0000 31.3278 46 7.65303993225098 109.121147944245 92.8447 91.0000 12.0808 167
1019 1 12.4507 0.1379 L 0.9196 107.4507 100.0000 33.9983 71 9.50789165496826 116.843752072058 96.6429 95.0000 14.5625 102
1020 1 80.8831 0.8961 C 1.3410 179.8831 174.0000 48.1121 77 9.90148735046387 134.143451993614 103.9226 99.0000 23.4290 174

Total number of rows: 54359

Table truncated, full table size 6605 Kbytes.




Supplementary file Size Download File type/resource
GSM128614.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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