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Sample GSM128618 Query DataSets for GSM128618
Status Public on Sep 28, 2010
Title 2029_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 18039.6563 164.3912 G 139.8767 18150.6563 3668.0000 21175.1504 188 15.4715557098389 129.76179109284 111.6417 111.0000 12.5079 124
1002 1 1393.5000 12.6986 G 11.9623 1501.5000 1726.0000 768.4475 106 11.617374420166 125.519166656436 107.6685 108.0000 11.6794 187
1003 1 2.2667 0.0207 L 0.8743 111.2667 111.0000 15.0575 30 6.18038702011108 127.257655062005 110.1868 109.0000 12.1718 188
1004 1 25.4524 0.2319 G 1.0712 133.4524 130.0000 16.9259 42 7.3127326965332 124.579147420258 107.9670 108.0000 11.0528 188
1005 1 19.2449 0.1754 L 0.9968 129.2449 132.0000 12.7688 49 7.89865398406982 129.66610236446 109.9011 110.0000 13.1107 188
1006 1 28.1346 0.2564 G 1.0734 135.1346 135.0000 13.6481 52 8.1368579864502 125.893474156823 106.8407 107.0000 12.5957 188
1007 1 49.8333 0.4541 G 1.2686 155.8333 151.0000 18.7243 78 9.96557521820068 122.836859908675 106.1758 106.0000 11.2246 188
1008 1 16288.5195 148.4335 G 128.4846 16398.5195 3439.0000 19656.1895 175 14.9270534515381 127.630214736458 109.4250 110.0000 11.7535 124
1009 1 867.7935 7.9080 G 7.7257 976.7935 1125.0000 467.9301 92 10.8230323791504 126.43476015294 109.7527 109.0000 11.6232 188
1010 1 1136.6591 10.3581 G 10.0023 1242.6591 1405.0000 674.5265 88 10.5851345062256 124.237256842895 107.0549 106.0000 12.1582 188
1011 1 92.0909 0.8392 G 1.5930 198.0909 200.0000 42.0201 77 9.90148735046387 124.348235851921 106.7527 106.0000 12.2322 188
1012 1 107.3151 0.9779 G 1.7115 214.3151 222.0000 44.8950 73 9.64087581634521 125.219536226534 107.7802 107.0000 12.1464 188
1013 1 54.8154 0.4995 G 1.2985 161.8154 162.0000 20.1822 65 9.09728336334229 124.612430656289 108.8626 107.0000 11.7416 188
1014 1 22.1538 0.2019 G 1.0435 129.1538 129.0000 15.0338 52 8.1368579864502 123.773321206813 105.8132 107.0000 11.1822 188
1015 1 16128.2930 146.9734 G 128.3901 16235.2930 4291.0000 19059.4668 166 14.5381488800049 126.452820389402 107.8167 107.0000 12.9685 124
1016 1 205.0260 1.8684 G 2.5040 311.0260 325.0000 81.7640 77 9.90148735046387 124.212267096787 106.8167 106.0000 12.1415 186
1017 1 11.4886 0.1047 L 0.9367 116.4886 117.0000 14.0874 88 10.5851345062256 124.354958850696 105.1915 105.0000 12.9033 194
1018 1 9.7353 0.0887 L 0.9276 116.7353 117.0000 14.7196 34 6.57952451705933 125.84592459872 108.1012 107.0000 12.5640 174
1019 1 22.2667 0.2029 G 1.0347 124.2667 125.0000 13.1105 45 7.56939744949341 120.093882094852 103.0714 102.0000 12.0626 188
1020 1 46.5224 0.4239 G 1.2159 154.5224 155.0000 20.8164 67 9.23618125915527 127.081110858497 107.4586 108.0000 12.7207 187

Total number of rows: 54359

Table truncated, full table size 6769 Kbytes.




Supplementary file Size Download File type/resource
GSM128618.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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