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Sample GSM128930 Query DataSets for GSM128930
Status Public on Sep 28, 2010
Title 2036_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 10947.9512 87.3128 G 122.0240 11023.9512 6441.0000 11085.0840 186 15.3890399932861 90.3424590848005 77.3417 76.0000 9.5616 124
1002 1 1041.4117 8.3055 G 12.4020 1118.4117 1225.0000 588.8734 104 11.5072546005249 90.1798500729058 77.7017 77.0000 8.7866 187
1003 1 5.3095 0.0423 L 0.8800 87.3095 86.0000 12.0069 84 10.3417663574219 99.2190520856914 81.2711 82.0000 11.4794 172
1004 1 0.8621 0.0069 L 0.8459 79.8621 77.0000 10.2645 29 6.07650756835938 94.4118785090983 79.6736 79.0000 10.2746 150
1005 1 5.4464 0.0434 L 0.9161 84.4464 87.0000 11.3907 56 8.444016456604 92.1802959579087 78.9316 79.0000 8.7869 121
1006 1 20.8800 0.1665 G 1.0866 98.8800 99.0000 9.1403 50 7.97884559631348 91.0005779517338 77.8933 78.0000 8.6671 184
1007 1 11.4545 0.0914 L 0.9697 88.4545 92.0000 11.5078 44 7.48482084274292 91.2188187416124 77.1538 77.0000 9.4792 188
1008 1 11092.6650 88.4670 G 118.9537 11171.6650 5768.0000 11157.3271 190 15.5536336898804 93.9161169491594 79.0888 79.0000 9.9441 222
1009 1 176.7802 1.4099 G 2.7378 254.7802 261.0000 67.8914 91 10.7640514373779 93.0613536174229 78.4942 78.0000 10.0409 178
1010 1 502.9894 4.0115 G 6.4351 579.9894 598.0000 265.1878 94 10.9400415420532 90.1296658411687 77.8314 77.0000 8.7531 178
1011 1 234.4783 1.8700 G 3.4020 311.4783 308.0000 108.0825 92 10.8230323791504 91.5567522965497 78.1923 77.0000 9.7045 188
1012 1 66.5769 0.5310 G 1.5561 143.5769 144.0000 26.3407 78 9.96557521820068 92.2647226792817 76.9286 77.0000 10.1765 188
1013 1 18.6182 0.1485 G 1.0545 94.6182 94.0000 11.6611 55 8.36828422546387 89.7270510421743 76.3626 76.0000 9.1514 188
1014 1 19.4286 0.1549 G 1.0507 96.4286 94.0000 12.3569 49 7.89865398406982 91.7716425357652 76.9286 77.0000 9.8478 188
1015 1 11635.3506 92.7950 G 126.7304 11713.3506 7293.0000 11038.7559 176 14.9696416854858 92.4273203840921 78.8000 78.0000 9.6182 124
1016 1 98.8902 0.7887 G 1.8935 176.8902 179.0000 33.4719 82 10.2179079055786 93.4195646195735 77.3022 78.0000 10.2797 188
1017 1 36.2466 0.2891 G 1.2429 115.2466 112.0000 18.8475 73 9.64087581634521 92.7267941628711 79.4890 79.0000 9.1512 188
1018 1 8.1379 0.0649 L 0.9401 84.1379 82.0000 11.5800 87 10.5248203277588 89.4962997509244 76.6736 76.0000 8.9975 199
1019 1 10.4524 0.0834 L 0.9690 88.4524 90.0000 13.4469 42 7.3127326965332 91.2815072086072 78.4184 78.0000 8.8543 145
1020 1 21.5909 0.1722 G 1.0813 103.5909 105.0000 18.3765 66 9.16699600219727 95.805994150983 82.0056 82.0000 9.2040 184

Total number of rows: 54359

Table truncated, full table size 6581 Kbytes.




Supplementary file Size Download File type/resource
GSM128930.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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