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GEO accession:
Sample GSM128930
Query DataSets for GSM128930
Status
Public on Sep 28, 2010
Title
2036_p_1
Sample type
RNA
Source name
biopsy, prior to treatment, carbon-ion radiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, carbon-ion radiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Sep 28, 2010
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE20167
Gene expression profiles of cervical cancers for novel molecular classification
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
10947.9512
87.3128
G
122.0240
11023.9512
6441.0000
11085.0840
186
15.3890399932861
90.3424590848005
77.3417
76.0000
9.5616
124
1002
1
1041.4117
8.3055
G
12.4020
1118.4117
1225.0000
588.8734
104
11.5072546005249
90.1798500729058
77.7017
77.0000
8.7866
187
1003
1
5.3095
0.0423
L
0.8800
87.3095
86.0000
12.0069
84
10.3417663574219
99.2190520856914
81.2711
82.0000
11.4794
172
1004
1
0.8621
0.0069
L
0.8459
79.8621
77.0000
10.2645
29
6.07650756835938
94.4118785090983
79.6736
79.0000
10.2746
150
1005
1
5.4464
0.0434
L
0.9161
84.4464
87.0000
11.3907
56
8.444016456604
92.1802959579087
78.9316
79.0000
8.7869
121
1006
1
20.8800
0.1665
G
1.0866
98.8800
99.0000
9.1403
50
7.97884559631348
91.0005779517338
77.8933
78.0000
8.6671
184
1007
1
11.4545
0.0914
L
0.9697
88.4545
92.0000
11.5078
44
7.48482084274292
91.2188187416124
77.1538
77.0000
9.4792
188
1008
1
11092.6650
88.4670
G
118.9537
11171.6650
5768.0000
11157.3271
190
15.5536336898804
93.9161169491594
79.0888
79.0000
9.9441
222
1009
1
176.7802
1.4099
G
2.7378
254.7802
261.0000
67.8914
91
10.7640514373779
93.0613536174229
78.4942
78.0000
10.0409
178
1010
1
502.9894
4.0115
G
6.4351
579.9894
598.0000
265.1878
94
10.9400415420532
90.1296658411687
77.8314
77.0000
8.7531
178
1011
1
234.4783
1.8700
G
3.4020
311.4783
308.0000
108.0825
92
10.8230323791504
91.5567522965497
78.1923
77.0000
9.7045
188
1012
1
66.5769
0.5310
G
1.5561
143.5769
144.0000
26.3407
78
9.96557521820068
92.2647226792817
76.9286
77.0000
10.1765
188
1013
1
18.6182
0.1485
G
1.0545
94.6182
94.0000
11.6611
55
8.36828422546387
89.7270510421743
76.3626
76.0000
9.1514
188
1014
1
19.4286
0.1549
G
1.0507
96.4286
94.0000
12.3569
49
7.89865398406982
91.7716425357652
76.9286
77.0000
9.8478
188
1015
1
11635.3506
92.7950
G
126.7304
11713.3506
7293.0000
11038.7559
176
14.9696416854858
92.4273203840921
78.8000
78.0000
9.6182
124
1016
1
98.8902
0.7887
G
1.8935
176.8902
179.0000
33.4719
82
10.2179079055786
93.4195646195735
77.3022
78.0000
10.2797
188
1017
1
36.2466
0.2891
G
1.2429
115.2466
112.0000
18.8475
73
9.64087581634521
92.7267941628711
79.4890
79.0000
9.1512
188
1018
1
8.1379
0.0649
L
0.9401
84.1379
82.0000
11.5800
87
10.5248203277588
89.4962997509244
76.6736
76.0000
8.9975
199
1019
1
10.4524
0.0834
L
0.9690
88.4524
90.0000
13.4469
42
7.3127326965332
91.2815072086072
78.4184
78.0000
8.8543
145
1020
1
21.5909
0.1722
G
1.0813
103.5909
105.0000
18.3765
66
9.16699600219727
95.805994150983
82.0056
82.0000
9.2040
184
Total number of rows:
54359
Table truncated, full table size
6581 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128930.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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