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Sample GSM128932 Query DataSets for GSM128932
Status Public on Mar 23, 2015
Title 2036_d_1
Sample type RNA
 
Source name biopsy, during treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 9666.5684 88.0939 G 101.9749 9749.5684 3275.0000 10300.1299 208 16.2737159729004 95.6075168321904 83.6244 83.0000 8.4050 213
1002 1 924.0714 8.4213 G 8.7302 1006.0714 1042.0000 514.9196 114 12.0477924346924 115.240566197472 85.6724 82.0000 22.1604 120
1003 1 28.3333 0.2582 G 1.1400 114.3333 103.0000 42.4965 45 7.56939744949341 100.293617718564 86.9098 86.0000 9.5291 126
1004 1 26.7000 0.2433 G 1.1069 112.7000 95.0000 48.5804 40 7.13649654388428 101.815442970085 86.3736 86.0000 10.5436 188
1005 1 20.1282 0.1834 G 1.0665 101.1282 96.0000 28.0651 39 7.04672574996948 94.8222895932933 82.3642 81.0000 9.2149 179
1006 1 25.7222 0.2344 G 1.0878 108.7222 108.0000 12.4490 54 8.29185962677002 99.9466415346597 84.0807 83.0000 11.2978 167
1007 1 16.8955 0.1540 L 0.9696 99.8955 102.0000 14.9777 67 9.23618125915527 103.031137130851 85.9153 83.0000 13.3541 122
1008 1 11250.7500 102.5309 G 114.6459 11334.7500 8281.0000 10799.4697 194 15.7165031433105 98.8674785547432 84.6909 84.0000 9.9117 228
1009 1 159.7111 1.4555 G 2.4555 242.7111 249.0000 53.1660 90 10.7047443389893 98.8419096140064 83.8407 83.0000 10.5613 188
1010 1 506.8192 4.6188 G 6.2433 587.8192 629.0000 256.1048 94 10.9400415420532 94.1522476623972 81.9172 81.0000 8.7682 175
1011 1 192.0400 1.7501 G 2.8691 274.0400 278.0000 85.3042 102 11.396071434021 95.5152568350658 82.2637 82.0000 9.0102 188
1012 1 63.8052 0.5815 G 1.4951 144.8052 147.0000 28.2829 77 9.90148735046387 96.8546392614861 82.1044 81.0000 10.5698 188
1013 1 27.2222 0.2481 G 1.1247 110.2222 110.0000 13.4862 54 8.29185962677002 98.0048323460006 83.5989 83.0000 10.0032 188
1014 1 16.4468 0.1499 G 1.0087 98.4468 101.0000 10.3014 47 7.73577785491943 97.5961263694901 82.8791 82.0000 10.3974 188
1015 1 10267.8447 93.5734 G 108.5159 10349.8447 3920.0000 10670.5820 210 16.3517684936523 95.3762639469983 82.4513 82.0000 8.9175 234
1016 1 78.0366 0.7112 G 1.6680 160.0366 160.0000 26.0677 82 10.2179079055786 95.9446780416107 83.6648 82.0000 9.2964 185
1017 1 43.0000 0.3919 G 1.2954 126.0000 127.0000 19.3014 77 9.90148735046387 97.2639577302636 83.1538 83.0000 9.5093 188
1018 1 10.1579 0.0926 L 0.9517 91.1579 91.0000 11.6504 95 10.9980792999268 95.7863810825223 82.7232 81.0000 9.8576 183
1019 1 15.9574 0.1454 G 1.0313 98.9574 98.0000 11.1240 47 7.73577785491943 95.9582891369946 83.6690 83.0000 8.6389 146
1020 1 31.7193 0.2891 G 1.1370 118.7193 117.0000 16.8062 57 8.51907634735107 104.41260970174 87.5220 87.0000 11.6084 188

Total number of rows: 54359

Table truncated, full table size 6588 Kbytes.




Supplementary file Size Download File type/resource
GSM128932.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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