NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM128933 Query DataSets for GSM128933
Status Public on Mar 23, 2015
Title 2036_d_2
Sample type RNA
 
Source name biopsy, during treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 10458.5342 96.4849 G 114.8380 10537.5342 4092.0000 11048.7246 191 15.5945100784302 91.7600264309671 79.5630 79.0000 8.5067 123
1002 1 887.1273 8.1842 G 10.0933 969.1273 1072.0000 524.1617 112 11.9416427612305 96.0171707802317 81.6583 82.0000 9.3448 124
1003 1 5.2857 0.0488 L 0.8869 90.2857 89.0000 14.6416 35 6.67558097839355 101.797375534107 85.8041 85.0000 11.1982 154
1004 1 5.5897 0.0516 L 0.9267 86.5897 86.0000 10.7768 39 7.04672574996948 93.4385692966696 80.8497 81.0000 8.2924 179
1005 1 6.0000 0.0554 L 0.7528 87.0000 85.0000 12.3400 29 6.07650756835938 115.567210032847 83.9474 81.0000 23.0448 158
1006 1 16.6667 0.1538 G 1.0144 97.6667 97.0000 14.0846 39 7.04672574996948 96.276641737138 81.5722 81.0000 10.1844 186
1007 1 25.4000 0.2343 G 1.1058 106.4000 101.0000 24.2800 50 7.97884559631348 96.2221185367002 81.0000 81.0000 10.1481 187
1008 1 11552.5928 106.5781 G 119.5093 11635.5928 7432.0000 11243.7744 179 15.0966844558716 97.3613812684951 83.1833 83.0000 9.5743 124
1009 1 161.1163 1.4864 G 2.5297 242.1163 247.0000 58.6635 86 10.4641580581665 95.7076475133108 81.7967 81.0000 9.8051 188
1010 1 452.0110 4.1700 G 5.7610 530.0110 566.0000 234.2679 91 10.7640514373779 91.9996768669871 78.5581 78.0000 9.3331 178
1011 1 160.8876 1.4843 G 2.5912 238.8876 235.0000 64.2382 89 10.6451082229614 92.1912871427057 79.3867 78.0000 9.4609 187
1012 1 48.0145 0.4430 G 1.3403 128.0145 128.0000 20.8233 69 9.37302112579346 95.5093786751662 81.6154 80.0000 10.3396 188
1013 1 21.1129 0.1948 G 1.0700 102.1129 102.0000 11.6717 62 8.88486671447754 95.4333349339436 80.8022 81.0000 9.6222 188
1014 1 10.1892 0.0940 L 0.9434 91.1892 91.0000 11.5099 37 6.86366271972656 96.6568564328209 81.6593 81.0000 10.4379 188
1015 1 10732.2871 99.0104 G 109.5910 10816.2871 4268.0000 11461.0625 190 15.5536336898804 98.6968800724685 84.1389 84.0000 9.7979 224
1016 1 66.3718 0.6123 G 1.5401 146.3718 145.0000 22.2780 78 9.96557521820068 95.0395382331048 81.8035 80.0000 10.0264 179
1017 1 29.6806 0.2738 G 1.1731 110.6806 110.0000 14.8369 72 9.57461452484131 94.3471534866006 80.2088 81.0000 8.8981 188
1018 1 4.4419 0.0410 L 0.8916 86.4419 87.0000 9.9832 86 10.4641580581665 96.9460859520629 82.1744 82.0000 9.9641 203
1019 1 10.4694 0.0966 L 0.9622 94.4694 95.0000 11.6787 100 11.2837915420532 98.1790444776581 84.5466 84.0000 9.4527 167
1020 1 24.2778 0.2240 G 1.0819 108.2778 107.0000 22.1923 54 8.29185962677002 100.079413463796 83.0946 84.0000 10.7196 154

Total number of rows: 54359

Table truncated, full table size 6562 Kbytes.




Supplementary file Size Download File type/resource
GSM128933.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap