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Sample GSM128940 Query DataSets for GSM128940
Status Public on Mar 23, 2015
Title 2312_d_1
Sample type RNA
 
Source name biopsy, during treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 16326.4199 123.9006 G 125.8099 16438.4199 6366.0000 18682.0820 166 14.5381488800049 130.660767875042 112.1833 112.0000 12.4405 124
1002 1 1386.8877 10.5250 G 11.6432 1496.8877 1740.0000 749.2354 100 11.2837915420532 128.563782801323 109.0549 110.0000 12.3759 188
1003 1 15.6667 0.1189 L 0.9922 124.6667 126.0000 18.8410 42 7.3127326965332 125.648872613573 109.5763 109.0000 11.0992 183
1004 1 24.6667 0.1872 G 1.0661 131.6667 130.0000 17.5702 45 7.56939744949341 123.500077543953 107.1000 107.0000 11.0001 186
1005 1 27.5106 0.2088 G 1.0701 133.5106 130.0000 16.4095 47 7.73577785491943 124.764028802144 106.5879 106.0000 12.5094 188
1006 1 30.0930 0.2284 G 1.0764 136.0930 133.0000 12.9880 43 7.3992772102356 126.430286984313 105.7500 106.0000 13.6202 186
1007 1 26.9756 0.2047 G 1.0646 131.9756 131.0000 16.3789 41 7.22515201568604 123.967605816119 105.2418 105.0000 12.6451 188
1008 1 16310.1270 123.7770 G 123.9710 16419.1270 6019.0000 18598.4043 151 13.8657550811768 132.443263608575 109.3500 109.0000 15.6288 124
1009 1 569.0795 4.3187 G 5.5259 674.0795 790.0000 304.6236 88 10.5851345062256 121.985697188909 105.3978 105.0000 11.3238 187
1010 1 937.0000 7.1109 G 8.4198 1041.0000 1274.0000 552.3393 81 10.1554126739502 123.636919831606 105.1491 104.0000 13.0913 167
1011 1 125.3867 0.9516 G 1.8646 229.3867 240.0000 49.9311 75 9.77204990386963 123.020013053618 104.5769 104.0000 12.6800 188
1012 1 144.9730 1.1002 G 2.0032 249.9730 267.0000 68.8317 74 9.70668506622314 124.784568579924 106.2747 105.0000 13.1897 188
1013 1 92.6491 0.7031 C 1.2698 200.6491 197.0000 23.3129 57 8.51907634735107 158.011283684845 111.2626 108.0000 33.3409 185
1014 1 34.6364 0.2629 G 1.1357 139.6364 135.0000 18.6092 55 8.36828422546387 122.955874308924 106.0440 105.0000 11.9706 188
1015 1 14790.7051 112.2462 G 118.0967 14898.7051 4549.0000 17357.9902 151 13.8657550811768 126.156800873225 106.8833 108.0000 12.1045 124
1016 1 65.9508 0.5005 G 1.3529 171.9508 169.0000 29.8155 61 8.81292343139648 127.101097600273 107.8571 106.0000 14.0674 188
1017 1 46.8030 0.3552 G 1.2187 151.8030 153.0000 18.3726 66 9.16699600219727 124.558082029275 105.6813 105.0000 13.0387 188
1018 1 19.3158 0.1466 L 0.9996 125.3158 125.0000 19.0941 38 6.95579624176025 125.367527768747 106.0950 106.0000 12.9117 185
1019 1 16.6757 0.1266 L 0.9859 120.6757 122.0000 13.1047 37 6.86366271972656 122.404187251996 104.5650 104.0000 12.2695 183
1020 1 42.0741 0.3193 G 1.1902 145.0741 146.0000 16.4281 54 8.29185962677002 121.886090646857 102.9611 103.0000 12.5907 186

Total number of rows: 54359

Table truncated, full table size 6774 Kbytes.




Supplementary file Size Download File type/resource
GSM128940.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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