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GEO accession:
Sample GSM128941
Query DataSets for GSM128941
Status
Public on Mar 23, 2015
Title
2312_d_2
Sample type
RNA
Source name
biopsy, during treatment, carbon-ion radiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
during treatment, carbon-ion radiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
20572.9277
175.4700
G
158.1738
20683.9277
8835.0000
21384.4238
153
13.9572792053223
130.767080590453
111.4250
111.0000
13.1781
124
1002
1
1264.4950
10.7851
G
10.7930
1373.4950
1614.0000
700.5735
101
11.3400707244873
127.258369198223
109.9176
109.0000
12.1722
188
1003
1
15.4186
0.1315
L
0.9696
124.4186
127.0000
14.2653
43
7.3992772102356
128.321870990706
109.7857
109.0000
12.8813
188
1004
1
25.4286
0.2169
G
1.0575
135.4286
135.0000
16.0471
49
7.89865398406982
128.070677023485
109.9571
110.0000
12.0471
169
1005
1
12.6957
0.1083
L
0.9486
118.6957
121.0000
20.2601
46
7.65303993225098
125.129836122723
108.0566
106.0000
12.7532
165
1006
1
32.2745
0.2753
G
1.0982
139.2745
139.0000
15.9215
51
8.0582389831543
126.820000084668
108.2692
107.0000
13.2133
188
1007
1
24.2679
0.2070
G
1.0439
131.2679
132.0000
12.8362
56
8.444016456604
125.750636202055
106.4775
107.0000
12.5004
184
1008
1
18000.9551
153.5332
G
144.1697
18107.9551
7058.0000
19091.8418
138
13.2554540634155
125.601702654964
108.9417
107.0000
12.4011
124
1009
1
615.0000
5.2454
G
5.7375
722.0000
823.0000
322.0286
88
10.5851345062256
125.839811155147
107.9121
107.0000
12.5599
188
1010
1
950.0488
8.1031
G
8.5022
1055.0488
1277.0000
564.9032
82
10.2179079055786
124.091327630488
106.5824
105.0000
12.7275
188
1011
1
105.7260
0.9018
G
1.6785
214.7260
213.0000
46.5374
73
9.64087581634521
127.928328132993
108.0055
109.0000
12.6189
188
1012
1
119.2464
1.0171
G
1.8220
223.2464
240.0000
52.3734
69
9.37302112579346
122.528937541809
105.1978
104.0000
12.3526
188
1013
1
85.3099
0.7276
G
1.5085
191.3099
193.0000
34.7046
71
9.50789165496826
126.825123367796
106.1758
106.0000
13.8834
188
1014
1
33.6780
0.2872
G
1.1226
139.6780
138.0000
15.8622
59
8.66724491119385
124.421411459158
106.3187
106.0000
12.2809
188
1015
1
17964.4883
153.2222
G
145.8416
18069.4883
10139.0000
18706.7090
131
12.9148902893066
123.898079405123
106.0698
105.0000
12.5987
178
1016
1
47.1071
0.4018
G
1.2468
153.1071
149.0000
20.8264
56
8.444016456604
122.800995406852
105.1975
106.0000
11.2007
168
1017
1
26.6875
0.2276
G
1.0820
129.6875
130.0000
13.1706
48
7.81764030456543
119.857114227861
103.7088
103.0000
11.2381
188
1018
1
20.3333
0.1734
G
1.0181
125.3333
129.0000
14.6287
36
6.7702751159668
123.099955613063
105.6758
105.0000
12.0666
188
1019
1
24.4167
0.2083
G
1.0533
130.4167
127.0000
14.8012
36
6.7702751159668
123.82093915933
104.3132
106.0000
11.8806
188
1020
1
47.4531
0.4047
G
1.2396
153.4531
153.0000
19.7428
64
9.02703380584717
123.787554296452
105.0055
106.0000
11.8584
188
Total number of rows:
54359
Table truncated, full table size
6771 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128941.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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