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Sample GSM128941 Query DataSets for GSM128941
Status Public on Mar 23, 2015
Title 2312_d_2
Sample type RNA
 
Source name biopsy, during treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 20572.9277 175.4700 G 158.1738 20683.9277 8835.0000 21384.4238 153 13.9572792053223 130.767080590453 111.4250 111.0000 13.1781 124
1002 1 1264.4950 10.7851 G 10.7930 1373.4950 1614.0000 700.5735 101 11.3400707244873 127.258369198223 109.9176 109.0000 12.1722 188
1003 1 15.4186 0.1315 L 0.9696 124.4186 127.0000 14.2653 43 7.3992772102356 128.321870990706 109.7857 109.0000 12.8813 188
1004 1 25.4286 0.2169 G 1.0575 135.4286 135.0000 16.0471 49 7.89865398406982 128.070677023485 109.9571 110.0000 12.0471 169
1005 1 12.6957 0.1083 L 0.9486 118.6957 121.0000 20.2601 46 7.65303993225098 125.129836122723 108.0566 106.0000 12.7532 165
1006 1 32.2745 0.2753 G 1.0982 139.2745 139.0000 15.9215 51 8.0582389831543 126.820000084668 108.2692 107.0000 13.2133 188
1007 1 24.2679 0.2070 G 1.0439 131.2679 132.0000 12.8362 56 8.444016456604 125.750636202055 106.4775 107.0000 12.5004 184
1008 1 18000.9551 153.5332 G 144.1697 18107.9551 7058.0000 19091.8418 138 13.2554540634155 125.601702654964 108.9417 107.0000 12.4011 124
1009 1 615.0000 5.2454 G 5.7375 722.0000 823.0000 322.0286 88 10.5851345062256 125.839811155147 107.9121 107.0000 12.5599 188
1010 1 950.0488 8.1031 G 8.5022 1055.0488 1277.0000 564.9032 82 10.2179079055786 124.091327630488 106.5824 105.0000 12.7275 188
1011 1 105.7260 0.9018 G 1.6785 214.7260 213.0000 46.5374 73 9.64087581634521 127.928328132993 108.0055 109.0000 12.6189 188
1012 1 119.2464 1.0171 G 1.8220 223.2464 240.0000 52.3734 69 9.37302112579346 122.528937541809 105.1978 104.0000 12.3526 188
1013 1 85.3099 0.7276 G 1.5085 191.3099 193.0000 34.7046 71 9.50789165496826 126.825123367796 106.1758 106.0000 13.8834 188
1014 1 33.6780 0.2872 G 1.1226 139.6780 138.0000 15.8622 59 8.66724491119385 124.421411459158 106.3187 106.0000 12.2809 188
1015 1 17964.4883 153.2222 G 145.8416 18069.4883 10139.0000 18706.7090 131 12.9148902893066 123.898079405123 106.0698 105.0000 12.5987 178
1016 1 47.1071 0.4018 G 1.2468 153.1071 149.0000 20.8264 56 8.444016456604 122.800995406852 105.1975 106.0000 11.2007 168
1017 1 26.6875 0.2276 G 1.0820 129.6875 130.0000 13.1706 48 7.81764030456543 119.857114227861 103.7088 103.0000 11.2381 188
1018 1 20.3333 0.1734 G 1.0181 125.3333 129.0000 14.6287 36 6.7702751159668 123.099955613063 105.6758 105.0000 12.0666 188
1019 1 24.4167 0.2083 G 1.0533 130.4167 127.0000 14.8012 36 6.7702751159668 123.82093915933 104.3132 106.0000 11.8806 188
1020 1 47.4531 0.4047 G 1.2396 153.4531 153.0000 19.7428 64 9.02703380584717 123.787554296452 105.0055 106.0000 11.8584 188

Total number of rows: 54359

Table truncated, full table size 6771 Kbytes.




Supplementary file Size Download File type/resource
GSM128941.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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