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Sample GSM128944 Query DataSets for GSM128944
Status Public on Mar 23, 2015
Title 2515_d_1
Sample type RNA
 
Source name biopsy, during treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 6156.8232 130.5832 G 59.5783 6245.8232 4850.0000 5687.0806 149 13.7736234664917 104.833900795027 89.4250 89.0000 10.5559 124
1002 1 181.5172 3.8499 G 2.6595 269.5172 287.0000 74.2326 87 10.5248203277588 101.343142184746 87.4780 88.0000 8.8954 188
1003 1 23.6271 0.5011 G 1.1035 108.6271 109.0000 12.7531 59 8.66724491119385 98.4359165923813 85.1593 85.0000 8.9573 188
1004 1 27.5690 0.5847 G 1.1375 113.5690 110.0000 14.3624 58 8.59348011016846 99.8417414626519 86.2692 86.0000 9.2278 188
1005 1 20.7458 0.4400 G 1.0715 104.7458 104.0000 12.3131 59 8.66724491119385 97.7588347147261 85.4341 84.0000 9.1726 188
1006 1 26.1379 0.5544 G 1.1106 111.1379 109.0000 13.1194 58 8.59348011016846 100.069569891688 85.0233 85.0000 10.0464 178
1007 1 24.0429 0.5099 G 1.0934 109.0429 111.0000 12.9553 70 9.44069766998291 99.7269103486983 85.0166 85.0000 9.8179 187
1008 1 6537.6621 138.6606 G 66.1465 6623.6621 5771.0000 5911.7524 150 13.8197660446167 100.136302993247 86.6333 86.0000 9.4242 124
1009 1 190.2000 4.0340 G 2.8192 272.2000 293.0000 76.0801 85 10.4031419754028 96.5521429028708 83.5220 82.0000 9.7014 188
1010 1 117.1667 2.4850 G 2.0364 202.1667 214.0000 49.3634 72 9.57461452484131 99.2747910536739 85.5659 85.0000 9.5165 188
1011 1 33.4366 0.7092 G 1.1845 119.4366 120.0000 13.4161 71 9.50789165496826 100.830622344711 85.4670 86.0000 9.8871 188
1012 1 36.8125 0.7808 G 1.2333 121.8125 121.0000 14.8827 64 9.02703380584717 98.7719409388946 85.1878 85.0000 9.1813 187
1013 1 25.6290 0.5436 G 1.1132 110.6290 112.0000 11.8692 62 8.88486671447754 99.3795379311763 85.2033 85.0000 9.5864 188
1014 1 63.4156 1.3450 G 1.5084 147.4156 149.0000 24.3472 77 9.90148735046387 97.7327096286129 84.2597 84.0000 9.1551 187
1015 1 6397.5127 135.6881 G 63.8253 6484.5127 3841.0000 6129.6626 158 14.1835060119629 101.597837840422 86.9167 87.0000 9.7319 124
1016 1 63.7600 1.3523 G 1.4922 148.7600 152.0000 23.6327 75 9.77204990386963 99.6912476659753 84.0497 85.0000 9.7942 187
1017 1 25.6176 0.5433 G 1.1265 110.6176 111.0000 10.2857 68 9.30485343933105 98.1964801452066 85.5714 85.0000 8.7977 188
1018 1 23.5600 0.4997 G 1.0911 106.5600 106.0000 10.1571 50 7.97884559631348 97.6615109831911 83.7527 83.0000 9.7743 188
1019 1 14.6604 0.3109 G 1.0083 101.6604 103.0000 11.5235 53 8.21472454071045 100.819649680324 86.3022 87.0000 9.2131 188
1020 1 22.5161 0.4776 G 1.0766 106.5161 108.0000 11.6103 62 8.88486671447754 98.937464207335 83.8846 84.0000 9.9583 188

Total number of rows: 54359

Table truncated, full table size 6542 Kbytes.




Supplementary file Size Download File type/resource
GSM128944.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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