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Sample GSM128946 Query DataSets for GSM128946
Status Public on Mar 23, 2015
Title 2772_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 5741.9126 134.2501 G 56.2294 5830.9126 5333.0000 4902.1953 151 13.8657550811768 103.698714331362 87.7083 89.0000 9.7991 124
1002 1 166.0000 3.8812 G 2.5534 252.0000 266.0000 62.5530 84 10.3417663574219 98.6929430875604 85.9286 86.0000 8.4620 188
1003 1 27.8475 0.6511 G 1.1343 115.8475 116.0000 11.6892 59 8.66724491119385 102.135656230208 88.0165 88.0000 9.4238 188
1004 1 33.9254 0.7932 G 1.1890 122.9254 120.0000 20.7021 67 9.23618125915527 103.38549298445 87.8791 89.0000 9.5903 188
1005 1 28.3934 0.6639 G 1.1492 114.3934 113.0000 15.2297 61 8.81292343139648 99.5431591327728 86.4231 86.0000 9.0288 188
1006 1 32.1538 0.7518 G 1.1722 118.1538 116.0000 11.9579 65 9.09728336334229 100.796039371569 86.7022 86.0000 9.8640 184
1007 1 26.7647 0.6258 G 1.1326 112.7647 113.0000 12.3671 68 9.30485343933105 99.5591480554822 85.7293 86.0000 9.0394 187
1008 1 6029.4575 140.9731 G 59.1639 6118.4575 4709.0000 5288.4541 155 14.04820728302 103.415434740643 87.7750 89.0000 9.6103 124
1009 1 89.4051 2.0904 G 1.7614 174.4051 178.0000 30.1316 79 10.0292530059814 99.0136692894969 86.0172 85.0000 9.3424 180
1010 1 123.4737 2.8869 G 2.0998 208.4737 222.0000 50.3672 76 9.83698177337646 99.2832731340913 85.3167 85.0000 9.5222 186
1011 1 33.5811 0.7851 G 1.2109 118.5811 118.0000 15.3421 74 9.70668506622314 97.9264456584273 84.9890 85.0000 8.6176 188
1012 1 39.1429 0.9152 G 1.2548 124.1429 122.0000 14.8782 63 8.95623207092285 98.9345054898284 84.9011 85.0000 9.2897 188
1013 1 28.3284 0.6623 G 1.1492 113.3284 114.0000 12.3824 67 9.23618125915527 98.6134616220446 85.2363 85.0000 9.0756 188
1014 1 40.7536 0.9528 G 1.2759 126.7536 126.0000 15.9777 69 9.37302112579346 99.3458269176147 87.0659 86.0000 8.8972 188
1015 1 6025.0557 140.8702 G 62.7377 6108.0557 5190.0000 5219.0747 163 14.4061803817749 97.3585490203494 84.0000 83.0000 9.5724 123
1016 1 44.0658 1.0303 G 1.3049 128.0658 127.0000 17.4916 76 9.83698177337646 98.1439745662839 84.7127 84.0000 9.4293 187
1017 1 35.3462 0.8264 G 1.2051 121.3462 120.0000 16.1482 78 9.96557521820068 100.693701117189 87.2308 86.0000 9.7958 188
1018 1 22.6119 0.5287 G 1.0827 108.6119 108.0000 10.9025 67 9.23618125915527 100.318038965465 86.0385 86.0000 9.5454 188
1019 1 20.9333 0.4894 G 1.0709 107.9333 109.0000 13.0663 60 8.74038791656494 100.789074741574 87.1264 87.0000 9.1927 188
1020 1 27.6364 0.6462 G 1.1364 110.6364 109.0000 12.9972 66 9.16699600219727 97.3542480325335 84.3483 83.0000 9.5695 184

Total number of rows: 54359

Table truncated, full table size 6541 Kbytes.




Supplementary file Size Download File type/resource
GSM128946.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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