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Sample GSM128948 Query DataSets for GSM128948
Status Public on Mar 23, 2015
Title 2772_d_1
Sample type RNA
 
Source name biopsy, during treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 5406.0571 129.9453 G 54.4628 5493.0571 5283.0000 4720.0317 160 14.2729930877686 100.858841521199 86.3083 87.0000 9.2392 124
1002 1 191.4118 4.6010 G 2.7757 275.4118 290.0000 71.3199 85 10.4031419754028 99.2214309089738 83.9392 84.0000 10.1476 187
1003 1 16.5091 0.3968 G 1.0429 98.5091 98.0000 11.2861 55 8.36828422546387 94.4596498672188 82.4780 82.0000 8.3064 188
1004 1 27.2064 0.6540 G 1.1417 108.2064 106.0000 12.2204 63 8.95623207092285 94.7732514311513 81.5667 81.0000 9.1822 186
1005 1 20.6769 0.4970 G 1.0857 101.6769 99.0000 12.9794 65 9.09728336334229 93.6472349605797 81.3022 81.0000 8.4315 188
1006 1 25.8621 0.6216 G 1.1232 107.8621 106.0000 12.1860 58 8.59348011016846 96.0293772781188 81.7637 82.0000 9.3529 188
1007 1 22.2090 0.5338 G 1.0829 102.2090 102.0000 13.6923 67 9.23618125915527 94.3847568421698 80.6236 80.0000 9.5898 184
1008 1 5493.7090 132.0522 G 57.1220 5576.7090 4433.0000 5075.1602 167 14.5818719863892 97.627960408174 82.3750 83.0000 9.7520 124
1009 1 81.1392 1.9503 G 1.7029 162.1392 164.0000 29.6288 79 10.0292530059814 95.2109359512116 81.9278 81.0000 9.4740 186
1010 1 180.0370 4.3275 G 2.7525 260.0370 277.0000 76.6031 81 10.1554126739502 94.4735802125225 81.2768 80.0000 9.6490 183
1011 1 30.1143 0.7239 G 1.1693 110.1143 111.0000 11.3748 70 9.44069766998291 94.1720045261827 80.9556 80.0000 9.4480 186
1012 1 30.6970 0.7379 G 1.1796 111.6970 110.0000 12.4011 66 9.16699600219727 94.6940006413443 82.1278 81.0000 9.1293 186
1013 1 20.8000 0.5000 G 1.0802 101.8000 103.0000 12.4804 55 8.36828422546387 94.2419800652397 80.9274 81.0000 8.8280 185
1014 1 43.4110 1.0435 G 1.3268 124.4110 123.0000 16.2403 73 9.64087581634521 93.7646307619506 80.8462 81.0000 8.5098 188
1015 1 5664.2485 136.1514 G 59.6650 5746.2485 4223.0000 5168.7588 171 14.7554721832275 96.308542391 81.4167 82.0000 9.5390 124
1016 1 32.4265 0.7794 G 1.2044 112.4265 111.0000 13.1768 68 9.30485343933105 93.3451730698386 80.0330 80.0000 8.8968 188
1017 1 31.4348 0.7556 G 1.1844 113.4348 111.0000 13.3736 69 9.37302112579346 95.77775404594 80.7418 82.0000 9.1852 188
1018 1 15.6531 0.3763 G 1.0343 97.6531 97.0000 10.5144 49 7.89865398406982 94.4167744622869 82.4560 82.0000 8.2778 188
1019 1 13.9245 0.3347 L 0.9972 95.9245 99.0000 11.9003 53 8.21472454071045 96.1978334027016 81.9451 82.0000 9.4652 188
1020 1 20.6909 0.4973 G 1.0652 104.6909 106.0000 13.3755 55 8.36828422546387 98.2788445408644 83.7912 84.0000 9.5192 188

Total number of rows: 54359

Table truncated, full table size 6534 Kbytes.




Supplementary file Size Download File type/resource
GSM128948.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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