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Sample GSM1290448 Query DataSets for GSM1290448
Status Public on Dec 31, 2014
Title 22_PRE [miRNA]
Sample type RNA
 
Source name human adipose tissue, pre surgery-induced weight loss
Organism Homo sapiens
Characteristics tissue: subcutaneous adipose
gender: female
condition: PRE surgery-induced weight loss
individual: 22
Extracted molecule total RNA
Extraction protocol RNA was extracted following Qiagen protocol.
Label biotin
Label protocol 350 ng of total RNA from each sample, isolated from human adipose tissue, was processed, labelled according to the Affymetrix GeneChip® WT Terminal Labeling Kit.
 
Hybridization protocol Sample was hybridized to Affymetrix miRNA 3.0 array using an Affymetrix GeneChip Hybridization Oven 645.
Scan protocol GeneChip was scanned using Affymetrix GeneChip Scanner 3000 7G.
Description Gene expression data from human adipose tissue.
Data processing The data were analyzed using the RMA algorithm (R version 3.0.2) and then LIMMA was applied to calculate significant differential expression between samples.
 
Submission date Dec 16, 2013
Last update date Oct 19, 2023
Contact name Júlia Perera-Bel
E-mail(s) mardata-bu@researchmar.net
Organization name Hospital del Mar Research Institute
Department MARData-BU
Street address Doctor Aiguader, 88
City Barcelona
ZIP/Postal code 08003
Country Spain
 
Platform ID GPL16384
Series (2)
GSE53377 Adipose transcriptome and microRNA profiles after surgery-induced weight loss [miRNA]
GSE53378 Adipose transcriptome and microRNA profiles after surgery-induced weight loss

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at
AFFX-BioB-M_at
AFFX-BioB-3_at
AFFX-BioC-5_at
AFFX-BioC-3_at
AFFX-BioDn-5_at
AFFX-BioDn-3_at
AFFX-CreX-5_at
AFFX-CreX-3_at
AFFX-HUMISGF3A/M97935_5_st
AFFX-HUMISGF3A/M97935_MA_st
AFFX-HUMISGF3A/M97935_MB_st
AFFX-HUMISGF3A/M97935_3_st
AFFX-HUMRGE/M10098_5_st
AFFX-HUMRGE/M10098_M_st
AFFX-HUMRGE/M10098_3_st
AFFX-HUMGAPDH/M33197_5_st
AFFX-HUMGAPDH/M33197_M_st
AFFX-HUMGAPDH/M33197_3_st
AFFX-HSAC07/X00351_5_st

Total number of rows: 25119

Table truncated, full table size 708 Kbytes.




Supplementary file Size Download File type/resource
GSM1290448_22_PRE_miRNA-3_0_.CEL.gz 788.1 Kb (ftp)(http) CEL
Processed data included within Sample table

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