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Sample GSM129109 Query DataSets for GSM129109
Status Public on Jun 13, 2008
Title NbHDM_6HRS_rep01
Sample type RNA
 
Source name Nb infected hdm challenge 6hrs
Organism Mus musculus
Characteristics 'strain:BALB/c WT', 'gender:male', 'age:8wks', 'tissue: whole lung', 'condition: Nb infected hdm challenge 6hrs'
Extracted molecule total RNA
Extraction protocol trizol extraction followed by qiagen RNeasy total RNA cleanup protocol
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using affy GCS3000
Description Intensity of hybridization for each probe pair was computed by GCOS 1.2 software (Affymetrix). (For more detailed methods, please refer to the website of the Malaria Research Institute Gene Array Core Facility (MRI-GACF) at the Johns Hopkins Bloomberg School of Public Health http://jhmmi.jhsph.edu)
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Aug 16, 2006
Last update date Aug 28, 2018
Contact name Joshua J Reece
E-mail(s) josh.reece@gmail.com
Organization name Johns Hopkins University BSPH
Department MMI
Lab Lab of Alan Scott
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL1261
Series (1)
GSE5555 Hookworm-Induced Persistent Changes to the Immunological Environment of the Lung
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 578.7 P
AFFX-BioB-M_at 880 P
AFFX-BioB-3_at 446 P
AFFX-BioC-5_at 1932.8 P
AFFX-BioC-3_at 2433.3 P
AFFX-BioDn-5_at 2972.5 P
AFFX-BioDn-3_at 9291.1 P
AFFX-CreX-5_at 18307.7 P
AFFX-CreX-3_at 24926 P
AFFX-DapX-5_at 32.4 A
AFFX-DapX-M_at 56.4 A
AFFX-DapX-3_at 8.5 A
AFFX-LysX-5_at 4 A
AFFX-LysX-M_at 11.2 A
AFFX-LysX-3_at 12.2 A
AFFX-PheX-5_at 16.2 A
AFFX-PheX-M_at 1.5 A
AFFX-PheX-3_at 60.6 A
AFFX-ThrX-5_at 9.2 A
AFFX-ThrX-M_at 3.8 A

Total number of rows: 45101

Table truncated, full table size 833 Kbytes.




Supplementary file Size Download File type/resource
GSM129109.CEL.gz 6.0 Mb (ftp)(http) CEL

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