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Sample GSM129111 Query DataSets for GSM129111
Status Public on Jun 13, 2008
Title NbHDM_6HRS_rep03
Sample type RNA
 
Source name Nb infected hdm challenge 6hrs
Organism Mus musculus
Characteristics 'strain:BALB/c WT', 'gender:male', 'age:8wks', 'tissue: whole lung', 'condition: Nb infected hdm challenge 6hrs'
Extracted molecule total RNA
Extraction protocol trizol extraction followed by qiagen RNeasy total RNA cleanup protocol
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using affy GCS3000
Description Intensity of hybridization for each probe pair was computed by GCOS 1.2 software (Affymetrix). (For more detailed methods, please refer to the website of the Malaria Research Institute Gene Array Core Facility (MRI-GACF) at the Johns Hopkins Bloomberg School of Public Health http://jhmmi.jhsph.edu)
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Aug 16, 2006
Last update date Aug 28, 2018
Contact name Joshua J Reece
E-mail(s) josh.reece@gmail.com
Organization name Johns Hopkins University BSPH
Department MMI
Lab Lab of Alan Scott
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL1261
Series (1)
GSE5555 Hookworm-Induced Persistent Changes to the Immunological Environment of the Lung
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 820.9 P
AFFX-BioB-M_at 1520.9 P
AFFX-BioB-3_at 917.8 P
AFFX-BioC-5_at 3470.7 P
AFFX-BioC-3_at 3766.1 P
AFFX-BioDn-5_at 4851.4 P
AFFX-BioDn-3_at 12166.9 P
AFFX-CreX-5_at 28551.8 P
AFFX-CreX-3_at 37096.1 P
AFFX-DapX-5_at 17.3 A
AFFX-DapX-M_at 29 A
AFFX-DapX-3_at 14.9 A
AFFX-LysX-5_at 15.2 A
AFFX-LysX-M_at 20.5 A
AFFX-LysX-3_at 41.9 A
AFFX-PheX-5_at 8.3 A
AFFX-PheX-M_at 12.7 A
AFFX-PheX-3_at 23.2 A
AFFX-ThrX-5_at 6.5 A
AFFX-ThrX-M_at 24.9 A

Total number of rows: 45101

Table truncated, full table size 833 Kbytes.




Supplementary file Size Download File type/resource
GSM129111.CEL.gz 5.7 Mb (ftp)(http) CEL

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