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Sample GSM129113 Query DataSets for GSM129113
Status Public on Jun 13, 2008
Title PBS_24HRS_rep02
Sample type RNA
 
Source name pbs challenge 24hrs
Organism Mus musculus
Characteristics 'strain:BALB/c WT', 'gender:male', 'age:8wks', 'tissue: whole lung', 'condition: pbs challenge 24hrs'
Extracted molecule total RNA
Extraction protocol trizol extraction followed by qiagen RNeasy total RNA cleanup protocol
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using affy GCS3000
Description Intensity of hybridization for each probe pair was computed by GCOS 1.2 software (Affymetrix). (For more detailed methods, please refer to the website of the Malaria Research Institute Gene Array Core Facility (MRI-GACF) at the Johns Hopkins Bloomberg School of Public Health http://jhmmi.jhsph.edu)
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Aug 16, 2006
Last update date Aug 28, 2018
Contact name Joshua J Reece
E-mail(s) josh.reece@gmail.com
Organization name Johns Hopkins University BSPH
Department MMI
Lab Lab of Alan Scott
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL1261
Series (1)
GSE5555 Hookworm-Induced Persistent Changes to the Immunological Environment of the Lung
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 471.1 P
AFFX-BioB-M_at 627.5 P
AFFX-BioB-3_at 371.5 P
AFFX-BioC-5_at 1683.5 P
AFFX-BioC-3_at 1828.6 P
AFFX-BioDn-5_at 2022.7 P
AFFX-BioDn-3_at 9156.8 P
AFFX-CreX-5_at 14537 P
AFFX-CreX-3_at 21267.2 P
AFFX-DapX-5_at 71.2 A
AFFX-DapX-M_at 46.8 A
AFFX-DapX-3_at 3.5 A
AFFX-LysX-5_at 3.4 A
AFFX-LysX-M_at 12.2 A
AFFX-LysX-3_at 55.9 A
AFFX-PheX-5_at 8.1 A
AFFX-PheX-M_at 9.6 A
AFFX-PheX-3_at 45.1 A
AFFX-ThrX-5_at 12.3 A
AFFX-ThrX-M_at 30.7 A

Total number of rows: 45101

Table truncated, full table size 834 Kbytes.




Supplementary file Size Download File type/resource
GSM129113.CEL.gz 5.8 Mb (ftp)(http) CEL

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