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Sample GSM1293410 Query DataSets for GSM1293410
Status Public on May 31, 2015
Title aorta of EC-DicerWT mice Replicate 1 (12wks)
Sample type RNA
Source name aorta, HFD for 12 weeks
Organism Mus musculus
Characteristics strain: VE-Cadherin-CreERT2Dicer1WT/WT/Apoe-/-
age: 6-8 weeks
gender: Female
protocol: HFD for 12 weeks
tissue: aorta
Extracted molecule total RNA
Extraction protocol mirVana miRNA Isolation Kit, see
Label FAM
Label protocol N/A
Hybridization protocol N/A
Scan protocol N/A
Description Biological replicate 1 of 3. (Dicer wildtype group)
EC-DicerWT 1
Data processing Taqman low density arrays were run on the 7900 HT Sequence Detection system. The ABI TaqMan SDS v2.3 software was utilized to obtain raw CT values. To review results, the raw CT data (SDS file format) were exported from the Plate Centric View into the ABI TaqMan RQ manager software. Automatic baseline and manual CTs were calculated with the RQ Manager Software for all samples. Statistical analysis: The global data set of miRs from card A and B was used for analysis. Data were calculated using Real Time StatMiner Tools [Integromics.]. Input data for analysis consisted of all samples. CT values were normalized to the most stable endogenous controls (snoRNA202, snoRNA135, snoRNA429 and MammU6 for Card A and B) according to the Genorm algorithm.
Submission date Dec 18, 2013
Last update date May 31, 2015
Contact name Andreas Schober
Organization name Ludwig-Maximilians-University
Department Institute for Cardiovascular Prevention
Street address Pettenkoferstr. 9
City Munich
State/province Bavaria
ZIP/Postal code 80336
Country Germany
Platform ID GPL18082
Series (1)
GSE53433 MiRNA profiling in aortas of Apoe-/- mice with an specific knock-out of Dicer in endothelial cells compared to control mice after 12 weeks of a high-fat diet

Data table header descriptions
VALUE [delta] CT = CT,sample - CT,endogenous control.

Data table
ath-miR159a-4373390 21.069
mmu-let-7a*-002478 6.027
mmu-let-7a-4373169 0.077
mmu-let-7b-4373168 -0.775
mmu-let-7c-1*-002479 8.387
mmu-let-7c-4373167 -2.016
mmu-let-7d*-001178 2.448
mmu-let-7d-4395394 -0.005
mmu-let-7e-4395517 -1.668
mmu-let-7f-4373164 2.070
mmu-let-7g*-002492 10.234
mmu-let-7g-4395393 1.466
mmu-let-7i-4395332 0.225
mmu-miR-100-4373160 21.069
mmu-miR-101a*-002507 9.156
mmu-miR-101a-4395364 3.015
mmu-miR-101b-002531 4.173
mmu-miR-103-4373158 2.862
mmu-miR-105-4395595 9.110
mmu-miR-106a-4395589 1.143

Total number of rows: 503

Table truncated, full table size 13 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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