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Sample GSM1313464 Query DataSets for GSM1313464
Status Public on Mar 31, 2014
Title OSK-red-1
Sample type RNA
 
Source name mouse reprogramming cells
Organism Mus musculus
Characteristics plate: 1
strain: B6
transfection: OSK
cell type: embryonic fibroblasts
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN miRNeasy micro kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Sample04.AVG_Signal
Data processing The data were preprocessed using Combat and quantile normalized in R
 
Submission date Jan 23, 2014
Last update date Mar 31, 2014
Contact name Ron Parchem
Organization name UCSF
Street address 35 Medical Center Way
City San Francisco
ZIP/Postal code 94143
Country USA
 
Platform ID GPL6885
Series (1)
GSE54341 Expression analysis of OSK and Sall4+OSK reprogramming cells sorted for expression of miR-290 and/or miR-302.

Data table header descriptions
ID_REF
VALUE quantile normalized in R
Sample04.Detection Pval

Data table
ID_REF VALUE Sample04.Detection Pval
ILMN_1212607 2901.896042 0.2593985
ILMN_1212612 3269.24273 0
ILMN_1212619 2998.874293 0.001253133
ILMN_1212628 2892.872268 0.2694235
ILMN_1212632 2907.234573 0.3997494
ILMN_1212636 7725.701387 0
ILMN_1212637 3646.013274 0
ILMN_1212645 2906.665237 0.716792
ILMN_1212648 3543.420717 0
ILMN_1212653 2917.956532 0.160401
ILMN_1212672 3222.379449 0
ILMN_1212682 2906.756643 0.1691729
ILMN_1212683 2890.932652 0.7456141
ILMN_1212685 2893.931054 0.7443609
ILMN_1212692 3259.91284 0
ILMN_1212693 3064.717685 0
ILMN_1212695 2902.666879 0.3270677
ILMN_1212698 2891.701155 0.6779448
ILMN_1212702 2899.259358 0.4323308
ILMN_1212703 2946.440998 0.005012531

Total number of rows: 25697

Table truncated, full table size 801 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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