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Sample GSM1313490 Query DataSets for GSM1313490
Status Public on Mar 31, 2014
Title Sall4+OSK-iPSCs-3
Sample type RNA
 
Source name mouse iPS cells
Organism Mus musculus
Characteristics plate: 4
strain: B6
transfection: Sall 4 + OSK
cell type: iPSCs
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN miRNeasy micro kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Sample30.AVG_Signal
Data processing The data were preprocessed using Combat and quantile normalized in R
 
Submission date Jan 23, 2014
Last update date Mar 31, 2014
Contact name Ron Parchem
Organization name UCSF
Street address 35 Medical Center Way
City San Francisco
ZIP/Postal code 94143
Country USA
 
Platform ID GPL6885
Series (1)
GSE54341 Expression analysis of OSK and Sall4+OSK reprogramming cells sorted for expression of miR-290 and/or miR-302.

Data table header descriptions
ID_REF
VALUE quantile normalized in R
Sample30.Detection Pval

Data table
ID_REF VALUE Sample30.Detection Pval
ILMN_1212607 2896.536905 0.6892231
ILMN_1212612 2972.838036 0.2406015
ILMN_1212619 2859.10014 0.2406015
ILMN_1212628 2901.211511 0.6829574
ILMN_1212632 2907.425284 0.1591479
ILMN_1212636 8894.383824 0
ILMN_1212637 3872.858984 0
ILMN_1212645 2898.539874 0.1140351
ILMN_1212648 3609.202116 0
ILMN_1212653 2896.560611 0.8471178
ILMN_1212672 3072.352402 0
ILMN_1212682 2915.241864 0.1052632
ILMN_1212683 2887.03169 0.8884712
ILMN_1212685 2892.411507 0.7067669
ILMN_1212692 3801.45968 0
ILMN_1212693 2903.592866 0.04511278
ILMN_1212695 2886.510648 0.9423559
ILMN_1212698 2895.072611 0.5501253
ILMN_1212702 2880.502026 0.6127819
ILMN_1212703 2920.003604 0.20802

Total number of rows: 25697

Table truncated, full table size 805 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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