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Sample GSM1318547 Query DataSets for GSM1318547
Status Public on Jan 31, 2014
Title PD patient 1
Sample type RNA
 
Source name peripheral blood
Organism Homo sapiens
Characteristics tissue: peripheral blood
diagnosis: Parkinson's disease
Extracted molecule total RNA
Extraction protocol The isolation of total RNA from whole blood was performed using the ZR Whole-Blood Total RNA Kit™ (Zymo Research Corp., Irvine, CA, USA) according to the manufacturer’s recommendations.
Label  biotin
Label protocol Standard Illumina protocol
 
Hybridization protocol Standard Illumina protocol
Scan protocol Standard Illumina protocol
Data processing The software package Genome Studio (Illumina, San Diego, California, USA) and the DAVID Bioinformatics Resources 6.7 database (http://david.abcc.ncifcrf.gov/home.jsp) were used for the statistical processing.
Normalized signal intensity was used for further investigation. A volcano plot was used to identify differentially expressed genes (using n-fold > 1.5 and P < 0.01 as the threshold of statistical significance). For further investigations, we selected transcripts that were common among all the pairs and pools.
 
Submission date Jan 30, 2014
Last update date Jan 31, 2014
Contact name Anelya Alieva
E-mail(s) anelja.a@gmail.com
Organization name IMG RAS
Street address 2 Kurchatova sq.
City Moscow
ZIP/Postal code 123182
Country Russia
 
Platform ID GPL10558
Series (1)
GSE54536 Involvement of endocytosis and alternative splicing in the formation of the pathological process in Parkinson's Disease

Data table header descriptions
ID_REF
VALUE Normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 17.93 0.29
ILMN_2055271 32.69 0.11
ILMN_1736007 26.23 0.17
ILMN_2383229 25.18 0.18
ILMN_1806310 9.07 0.40
ILMN_1779670 -19.42 0.74
ILMN_1653355 21.88 0.22
ILMN_1717783 -56.44 1.00
ILMN_1705025 62.38 0.00
ILMN_1814316 7.02 0.42
ILMN_2359168 -20.53 0.75
ILMN_1731507 -23.82 0.77
ILMN_1787689 -32.82 0.85
ILMN_3241953 36.15 0.08
ILMN_1745607 -36.77 0.91
ILMN_2136495 -40.23 0.93
ILMN_1668111 9.79 0.39
ILMN_2295559 13.13 0.35
ILMN_1735045 -32.58 0.85
ILMN_1680754 17.08 0.30

Total number of rows: 47231

Table truncated, full table size 1124 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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