|
| Status |
Public on Mar 01, 2014 |
| Title |
Non stim 1 |
| Sample type |
RNA |
| |
|
| Source name |
BMMF
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
cell type: bone marrow macrophage
|
| Growth protocol |
Total BM cells after red blood cell lysis were plated at 6x10^6 cells in 15 cm Petri dish in 20 ml MF growth media (complete RPMI, 20% FBS, 30% L929 conditional sup containing MCSF). Cells were fed with additional 20 ml of growth media on day 4. On day 7, cells were lifted using cold PBS + 5m MEDTA and replated in non-TC dishes in MF replating media (complete RPMI, 10% FBS, 15% L929 conditional sup containing MCSF). On day 8 cells were stimulated as indicated.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA from stimulated or control BMMF was isolated using Qiagen RNEasy Kit. DNA was removed using Qiagen Dnase protocol.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA was prepared using the Ambion Illumina® TotalPrepTM RNA Amplification Kit
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol with Cy3-SAV
|
| Scan protocol |
Standard Illumina scanning protocol using HiScan System
|
| Description |
N/A
|
| Data processing |
The data were analysed in Genome Studio Illumina Software
|
| |
|
| Submission date |
Feb 10, 2014 |
| Last update date |
Mar 01, 2014 |
| Contact name |
Ruslan Medzhitov |
| Organization name |
Yale University
|
| Department |
Immunobiology
|
| Street address |
PO Box 208011 300 Cedar Street TAC S660
|
| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06520 |
| Country |
USA |
| |
|
| Platform ID |
GPL6885 |
| Series (2) |
| GSE54811 |
Bone marrow macrophage (BMMF) response to IFNgR+FcgRI coincidence detection |
| GSE54824 |
A role for the ITAM signaling module in specifying cytokine receptor functions |
|
