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Sample GSM1330542 Query DataSets for GSM1330542
Status Public on Jun 01, 2015
Title liver_wt_rep1 [BH4 study]
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype/variation: wild type
allels: Pts-R15C-ki
age: 17 weeks
mouse id: 30164244
gender: male
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 9
replicate 1
Data processing The data were normalized using cubic spline normalization with Illumina Genomestudio 2011.1
 
Submission date Feb 19, 2014
Last update date Jun 01, 2015
Contact name Martin Irmler
Organization name Helmholtz Zentrum München GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE55148 Mildly compromised tetrahydrobiopterin biosynthesis mouse mutants exhibit abnormal body fat distribution and abdominal obesity

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1529.251 0
ILMN_2721178 480.7917 0
ILMN_3033922 1051.74 0
ILMN_3092673 3199.777 0
ILMN_2816356 168.5727 0.007518797
ILMN_2808939 1204.285 0
ILMN_2634564 422.3192 0
ILMN_2737647 130.961 0.2293233
ILMN_2734484 628.418 0
ILMN_2952292 213.8837 0
ILMN_2699078 123.0336 0.5977443
ILMN_1213681 323.3956 0
ILMN_2735413 638.6563 0
ILMN_2735415 747.9851 0
ILMN_2891688 519.4618 0
ILMN_2637698 723.2248 0
ILMN_2674228 289.199 0
ILMN_2601546 134.2229 0.1453634
ILMN_1230831 128.899 0.283208
ILMN_2848071 913.2681 0

Total number of rows: 25697

Table truncated, full table size 729 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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