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Sample GSM1332326 Query DataSets for GSM1332326
Status Public on Jul 02, 2014
Title 3 Ctrl 3
Sample type RNA
 
Source name Alveolar type 2 cells_control
Organism Rattus norvegicus
Characteristics strain background: Sprague Dawley
gender: male
diet: isocaloric control diet without EtOH for 6wks
sample group: Control
cell type: Alveolar type 2 cells
Treatment protocol Alveolar type 2 cells were isolated using an immunoabsorption technique.
Growth protocol Male Spargue Dawley rats were fed the liquid Lieber-DeCarlie diet containg EtOH for 6 wk or an isocaloric control diet without EtOH.
Extracted molecule total RNA
Extraction protocol RNA was extracted by Trizol.
Label biotin
Label protocol Biotinylation of RNA was completed as described in the Affymetrix user manual.
 
Hybridization protocol Standard Affymetrix hybridization protocol
Scan protocol Mouse Genome 430 2.0 GeneChips were scanned using the Affymetrix 3000 scanner/AGCC.
Description 3 Ctrl 3.CEL
Data processing Data were analyzed by GeneSpring GX.
 
Submission date Feb 21, 2014
Last update date Jul 02, 2014
Contact name Gregory Doho
E-mail(s) gdoho@emory.edu
Organization name Emory University
Street address 1365B Clifton Rd NE
City Atlanta
State/province GA
ZIP/Postal code 30322
Country USA
 
Platform ID GPL85
Series (1)
GSE55243 Genomic Microarray of Rat Alveolar Type 2 cells Following Chronic Ethanol Ingestion

Data table header descriptions
ID_REF
VALUE normalized

Data table
ID_REF VALUE
A01157cds_s_at 3.9336
A03913cds_s_at 4.65564
A04674cds_s_at 4.08948
A07543cds_s_at 5.03015
A09811cds_s_at 5.14646
A16585cds_s_at 4.35755
A17753cds_s_at 4.70415
A30543cds_s_at 3.6459
A44407cds_at 4.18634
AA108277_at 3.31697
AA108308_i_at 3.05188
AA108308_s_at 5.88859
AA684537_at 4.44481
AA684929_f_at 5.85615
AA684960_f_at 5.97138
AA684963_at 5.23021
AA685112_at 4.24901
AA685152_r_at 3.74107
AA685376_f_at 5.29439
AA685876_at 5.94234

Total number of rows: 8799

Table truncated, full table size 182 Kbytes.




Supplementary file Size Download File type/resource
GSM1332326_3_Ctrl_3.CEL.gz 1.7 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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