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| Status |
Public on Sep 12, 2006 |
| Title |
HT29tTSTetOH1_PLK1_Doxycycline_0ng/ml_24h vs. HT29tTSTetOH1_PLK1_Doxycycline_50ng/ml_24h |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HT29tTSTetOH1_PLK1_Doxycycline_0ng/ml_24h
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HT29tTSTetOH1_PLK1_Doxycycline_50ng/ml_24h
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
For details please see: Jackson AL, Burchard J, Schelter J, Chau BN, Cleary M, Lim L, and Linsley PS. RNA (2006) 12(7):1179-1187
|
| Data processing |
Local background correction
|
| |
|
| Submission date |
Sep 01, 2006 |
| Last update date |
Sep 13, 2006 |
| Contact name |
Aimee Jackson |
| Organization name |
Regulus Therapeutics
|
| Street address |
1896 Rutherford Rd
|
| City |
Carlsbad |
| State/province |
CA |
| ZIP/Postal code |
92008 |
| Country |
USA |
| |
|
| Platform ID |
GPL3991 |
| Series (1) |
| GSE5814 |
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity |
|
| Data table header descriptions |
| ID_REF |
Rosetta generated unique probe identifier |
| VALUE |
Corrected (normalized) Log10 Ratio of channels (CH2/CH1) |
| LOGINTENSITY |
Corrected average log intensity of channels |
| INTENSITY1 |
Raw Cy3 intensity (CH1) |
| INTENSITY2 |
Raw Cy5 intensity (CH2) |
| PVALUE |
P-value of LogRatio |
| QUALITY |
1 - if good and non control, 0 - otherwise |
| Data table |
| ID_REF |
VALUE |
LOGINTENSITY |
INTENSITY1 |
INTENSITY2 |
PVALUE |
QUALITY |
| 10019475365 |
0.0367 |
-1.0263 |
0.0921 |
0.0998 |
6.2338e-001 |
1 |
| 10019481149 |
0.0325 |
0.0098 |
0.9847 |
1.0762 |
7.0038e-001 |
1 |
| 10019495284 |
0.0255 |
0.3413 |
2.1384 |
2.2624 |
7.2208e-001 |
1 |
| 10019687586 |
0.0437 |
-1.3491 |
0.0435 |
0.0481 |
5.8436e-001 |
1 |
| 10019713746 |
0.0246 |
-0.3835 |
0.4022 |
0.4255 |
6.3014e-001 |
1 |
| 10019799479 |
0.0125 |
-0.7539 |
0.1747 |
0.1797 |
7.9270e-001 |
1 |
| 10019809115 |
-0.0120 |
-0.5759 |
0.2693 |
0.2619 |
8.0495e-001 |
1 |
| 10019874890 |
-0.0042 |
-0.9094 |
0.1238 |
0.1226 |
9.3206e-001 |
1 |
| 10019909307 |
-0.0267 |
-0.8360 |
0.1527 |
0.1437 |
8.2840e-001 |
1 |
| 10019911222 |
0.0211 |
-0.9016 |
0.1230 |
0.1293 |
6.9974e-001 |
1 |
| 10019924807 |
-0.0395 |
-1.9791 |
0.0116 |
0.0113 |
8.6666e-001 |
1 |
| 10019927856 |
0.0384 |
-0.3225 |
0.4555 |
0.5010 |
5.4613e-001 |
1 |
| 10019932383 |
-0.0821 |
-0.4539 |
0.3867 |
0.3201 |
6.9660e-002 |
1 |
| 10019948931 |
-0.1888 |
-1.9813 |
0.0173 |
0.0108 |
3.4031e-001 |
1 |
| 10019975533 |
-0.0279 |
-1.7205 |
0.0197 |
0.0187 |
8.4632e-001 |
1 |
| 10019977227 |
0.0418 |
-0.6335 |
0.2215 |
0.2479 |
6.6664e-001 |
1 |
| 10019987588 |
0.0323 |
-1.1610 |
0.0670 |
0.0715 |
6.8013e-001 |
1 |
| 10020008603 |
0.0078 |
-1.2493 |
0.0597 |
0.0609 |
9.2339e-001 |
1 |
| 10020014121 |
-0.0144 |
-0.6668 |
0.2212 |
0.2125 |
8.1919e-001 |
1 |
| 10020044367 |
0.0094 |
-0.8767 |
0.1319 |
0.1354 |
8.9464e-001 |
1 |
Total number of rows: 23353
Table truncated, full table size 1262 Kbytes.
| Supplementary data files not provided |
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