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Sample GSM1336326 Query DataSets for GSM1336326
Status Public on May 14, 2015
Title WSB_NAIVE_4
Sample type RNA
 
Source name WSB NAIVE replicate 4
Organism Mus musculus
Characteristics strain: WSB
treatment: NAIVE
tissue: dorsal root ganglion
Treatment protocol Total RNA was extracted from naïve and injured DRGs (6 DRGs per sample, 3 mice) across 9 strains and assessed with the Agilent Bioanalyzer (Agilent Technologies). Four biologically distinct replicates were run per sample for a total of 72 arrays.
Extracted molecule total RNA
Extraction protocol RNA was extracted
Label biotin
Label protocol Biotinylated cRNA were prepared with Illumina kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description WSB NAIVE replicate 4
Data processing The data were log2 transformed and normalised using quantile normalisation in R
 
Submission date Feb 27, 2014
Last update date May 14, 2015
Contact name Giovanni Coppola
E-mail(s) gcoppola@ucla.edu
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE55424 Regeneration occurs in the CNS of CAST/Ei mice as a consequence of enhanced Activin signaling

Data table header descriptions
ID_REF
VALUE quantile normalized
WSB_NAIVE_4.detction.pVal

Data table
ID_REF VALUE WSB_NAIVE_4.detction.pVal
ILMN_1212607 8.090974933 0.2205514
ILMN_1212612 12.38578615 0
ILMN_1212619 9.451344794 0
ILMN_1212628 8.399602033 0.0112782
ILMN_1212632 8.02422687 0.3746867
ILMN_1212636 12.64752089 0
ILMN_1212637 9.922642213 0
ILMN_1212645 8.453550393 0.00877193
ILMN_1212648 9.559713716 0
ILMN_1212653 9.153954428 0
ILMN_1212672 8.852621099 0.001253133
ILMN_1212682 8.283127723 0.03383459
ILMN_1212683 7.826304907 0.9548872
ILMN_1212685 8.021295701 0.3847118
ILMN_1212692 8.077282588 0.254386
ILMN_1212693 8.357128316 0.01629073
ILMN_1212695 8.093769144 0.216792
ILMN_1212698 7.927868721 0.7218045
ILMN_1212702 13.34075134 0
ILMN_1212703 8.414738687 0.0112782

Total number of rows: 25697

Table truncated, full table size 808 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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