NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1336371 Query DataSets for GSM1336371
Status Public on May 14, 2015
Title C57_AX5D_2
Sample type RNA
 
Source name C57 AX5D replicate 2
Organism Mus musculus
Characteristics strain: C57
treatment: AX5D
tissue: dorsal root ganglion
Treatment protocol Total RNA was extracted from naïve and injured DRGs (6 DRGs per sample, 3 mice) across 9 strains and assessed with the Agilent Bioanalyzer (Agilent Technologies). Four biologically distinct replicates were run per sample for a total of 72 arrays.
Extracted molecule total RNA
Extraction protocol RNA was extracted
Label biotin
Label protocol Biotinylated cRNA were prepared with Illumina kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description C57 AX5D replicate 2
Data processing The data were log2 transformed and normalised using quantile normalisation in R
 
Submission date Feb 27, 2014
Last update date May 14, 2015
Contact name Giovanni Coppola
E-mail(s) gcoppola@ucla.edu
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE55424 Regeneration occurs in the CNS of CAST/Ei mice as a consequence of enhanced Activin signaling

Data table header descriptions
ID_REF
VALUE quantile normalized
C57_AX5D_2.detction.pVal

Data table
ID_REF VALUE C57_AX5D_2.detction.pVal
ILMN_1212607 8.169052441 0.09398496
ILMN_1212612 11.9647056 0
ILMN_1212619 10.40145944 0
ILMN_1212628 8.490391384 0.002506266
ILMN_1212632 8.188221091 0.07393484
ILMN_1212636 12.52669619 0
ILMN_1212637 9.872845853 0
ILMN_1212645 8.924759779 0
ILMN_1212648 9.087023263 0
ILMN_1212653 9.26966684 0
ILMN_1212672 8.804198047 0
ILMN_1212682 8.109096862 0.1641604
ILMN_1212683 7.999497416 0.4511278
ILMN_1212685 8.039486332 0.3107769
ILMN_1212692 8.249427042 0.04010025
ILMN_1212693 8.262569218 0.03759398
ILMN_1212695 7.987756601 0.4887218
ILMN_1212698 7.829780214 0.9498747
ILMN_1212702 14.48490739 0
ILMN_1212703 8.539106404 0.001253133

Total number of rows: 25697

Table truncated, full table size 792 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap