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Sample GSM1337304 Query DataSets for GSM1337304
Status Public on Mar 05, 2014
Title Normal, synovial membrane patient EB_125 (U133A)
Sample type RNA
Source name synovial membrane patient EB_125 (normal controls)
Organism Homo sapiens
Characteristics gender: male
age: 61
clinical status: normal control
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
1007_s_at 455.2 P 0.002617
1053_at 130.5 P 0.017001
117_at 385 P 0.000388
121_at 696.6 P 0.013092
1255_g_at 27.9 A 0.397994
1294_at 651.7 P 0.000562
1316_at 101 P 0.014937
1320_at 85.6 A 0.234557
1405_i_at 360.9 P 0.001165
1431_at 86.5 P 0.007543
1438_at 103.7 A 0.250724
1487_at 599.2 P 0.013092
1494_f_at 213.2 P 0.024711
1598_g_at 2618.9 P 0.000219
160020_at 3172.4 P 0.001141
1729_at 714.2 P 0.001602
177_at 192.4 P 0.001892
1773_at 146.8 A 0.089405
179_at 448.6 P 0.014937
1861_at 238.8 P 0.005643

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.

Supplementary file Size Download File type/resource
GSM1337304_EB_125.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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