NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1337306 Query DataSets for GSM1337306
Status Public on Mar 05, 2014
Title Normal, synovial membrane patient EB_188 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_188 (normal controls)
Organism Homo sapiens
Characteristics gender: female
age: 78
clinical status: normal control
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_188
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 1045.9 P 0.001602
1053_at 179.7 P 0.024711
117_at 216.3 P 0.002228
121_at 1069.1 P 0.003067
1255_g_at 54.1 A 0.138765
1294_at 531.1 P 0.001354
1316_at 96.6 P 0.003585
1320_at 35.6 A 0.397994
1405_i_at 30.5 P 0.048099
1431_at 20.9 A 0.175989
1438_at 78.2 A 0.5
1487_at 470.5 P 0.02786
1494_f_at 263.5 P 0.024711
1598_g_at 5635.1 P 0.000219
160020_at 855.4 P 0.009985
1729_at 349.5 P 0.000805
177_at 183.5 P 0.011447
1773_at 146.5 A 0.07383
179_at 488.1 P 0.02786
1861_at 266.3 P 0.004863

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.




Supplementary file Size Download File type/resource
GSM1337306_EB_188.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap