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Sample GSM1337307 Query DataSets for GSM1337307
Status Public on Mar 05, 2014
Title Normal, synovial membrane patient EB_228 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_228 (normal controls)
Organism Homo sapiens
Characteristics gender: male
age: 65
clinical status: normal control
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_228
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 267.2 A 0.07383
1053_at 230.9 P 0.02786
117_at 432.9 P 0.000219
121_at 1226.6 P 0.007543
1255_g_at 60.5 A 0.150527
1294_at 247.6 P 0.02786
1316_at 80.3 P 0.014937
1320_at 34 A 0.397994
1405_i_at 10 A 0.834732
1431_at 58.3 M 0.060419
1438_at 26.9 A 0.5
1487_at 785.6 P 0.011447
1494_f_at 289.1 P 0.017001
1598_g_at 924.9 P 0.003067
160020_at 830 P 0.013092
1729_at 237.5 P 0.004863
177_at 55.5 A 0.218983
1773_at 126.9 A 0.162935
179_at 558.8 A 0.081337
1861_at 110 M 0.060419

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.




Supplementary file Size Download File type/resource
GSM1337307_EB_228.CEL.gz 2.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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