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Sample GSM1337308 Query DataSets for GSM1337308
Status Public on Mar 05, 2014
Title Normal, synovial membrane patient J_19 (U133A)
Sample type RNA
Source name synovial membrane patient J_19 (normal controls)
Organism Homo sapiens
Characteristics gender: male
age: 53
clinical status: normal control
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
1007_s_at 403.2 P 0.004863
1053_at 172.6 P 0.001602
117_at 416.1 P 0.000388
121_at 1107.5 P 0.003585
1255_g_at 58.9 A 0.098054
1294_at 318.1 P 0.003067
1316_at 95.2 P 0.001141
1320_at 15.2 A 0.47938
1405_i_at 495.6 P 0.001165
1431_at 36 A 0.162935
1438_at 59.3 A 0.581931
1487_at 655.8 P 0.007543
1494_f_at 322.8 P 0.019304
1598_g_at 1766.4 P 0.000562
160020_at 727 P 0.014937
1729_at 426.3 P 0.001354
177_at 113 A 0.081337
1773_at 164.1 P 0.043968
179_at 609 P 0.02786
1861_at 181.7 P 0.017001

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.

Supplementary file Size Download File type/resource
GSM1337308_J_19.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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