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Sample GSM1337309 Query DataSets for GSM1337309
Status Public on Mar 05, 2014
Title Normal, synovial membrane patient NST_1 (U133A)
Sample type RNA
 
Source name synovial membrane patient NST_1 (normal controls)
Organism Homo sapiens
Characteristics gender: male
age: 68
clinical status: normal control
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
NST_1
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 300.7 P 0.008689
1053_at 111.1 P 0.035163
117_at 175.7 P 0.004863
121_at 937.9 P 0.002228
1255_g_at 33.4 A 0.458816
1294_at 286.8 P 0.003067
1316_at 99.2 P 0.014937
1320_at 98.4 A 0.07383
1405_i_at 24.5 A 0.48748
1431_at 53 P 0.021866
1438_at 28 A 0.5
1487_at 692.3 P 0.014937
1494_f_at 119.6 A 0.098054
1598_g_at 4550.5 P 0.003585
160020_at 1037.3 P 0.003585
1729_at 650.3 P 0.000959
177_at 118.3 P 0.005643
1773_at 172.5 P 0.043968
179_at 342.5 A 0.066865
1861_at 243.3 P 0.003067

Total number of rows: 22283

Table truncated, full table size 592 Kbytes.




Supplementary file Size Download File type/resource
GSM1337309_NST_1.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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