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Sample GSM1337310 Query DataSets for GSM1337310
Status Public on Mar 05, 2014
Title Normal, synovial membrane patient J_2 (U133A)
Sample type RNA
Source name synovial membrane patient J_2 (normal controls)
Organism Homo sapiens
Characteristics gender: female
age: 29
clinical status: normal control
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
1007_s_at 458.9 P 0.002617
1053_at 155.1 P 0.009985
117_at 301.2 P 0.000266
121_at 891.7 P 0.002617
1255_g_at 57.6 A 0.138765
1294_at 641 P 0.000388
1316_at 62.1 P 0.004863
1320_at 80.9 A 0.150527
1405_i_at 212 P 0.003159
1431_at 42.3 M 0.060419
1438_at 167.3 P 0.02786
1487_at 508.2 P 0.02786
1494_f_at 128 A 0.081337
1598_g_at 5259.7 P 0.000219
160020_at 2290.1 P 0.000959
1729_at 821.2 P 0.001602
177_at 157.6 P 0.00418
1773_at 179.7 P 0.039365
179_at 496.4 M 0.05447
1861_at 235.6 P 0.003585

Total number of rows: 22283

Table truncated, full table size 592 Kbytes.

Supplementary file Size Download File type/resource
GSM1337310_J_2.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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