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Sample GSM1337311 Query DataSets for GSM1337311
Status Public on Mar 05, 2014
Title Normal, synovial membrane patient J_6 (U133A)
Sample type RNA
 
Source name synovial membrane patient J_6 (normal controls)
Organism Homo sapiens
Characteristics gender: male
age: 17
clinical status: normal control
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
J_6
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 474.2 P 0.005643
1053_at 199.1 M 0.060419
117_at 446.7 P 0.00418
121_at 841.3 P 0.001141
1255_g_at 39.8 A 0.339558
1294_at 827 P 0.000266
1316_at 94.1 P 0.021866
1320_at 55.4 A 0.284747
1405_i_at 240.9 P 0.000491
1431_at 91.1 P 0.001602
1438_at 95.6 A 0.250724
1487_at 491.1 P 0.043968
1494_f_at 181.1 P 0.014937
1598_g_at 4083.6 P 0.000219
160020_at 1478 P 0.001141
1729_at 714.6 P 0.003585
177_at 183.3 P 0.006532
1773_at 159.6 P 0.02786
179_at 551.8 P 0.048995
1861_at 217.4 P 0.002617

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.




Supplementary file Size Download File type/resource
GSM1337311_J_6.CEL.gz 2.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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