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Sample GSM1337312 Query DataSets for GSM1337312
Status Public on Mar 05, 2014
Title Normal, synovial membrane patient J_7 (U133A)
Sample type RNA
 
Source name synovial membrane patient J_7 (normal controls)
Organism Homo sapiens
Characteristics gender: male
age: 39
clinical status: normal control
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
J_7
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 461.8 P 0.003585
1053_at 128.1 P 0.002228
117_at 473.6 P 0.000388
121_at 1174.5 P 0.001892
1255_g_at 40.6 A 0.35869
1294_at 907.1 P 0.000219
1316_at 120.2 P 0.002617
1320_at 102.5 A 0.267463
1405_i_at 222.9 P 0.001165
1431_at 80 P 0.001602
1438_at 117.1 A 0.267463
1487_at 459.1 P 0.035163
1494_f_at 160.7 P 0.031336
1598_g_at 2993 P 0.000219
160020_at 1207.9 P 0.00418
1729_at 800.5 P 0.001602
177_at 190.2 P 0.014937
1773_at 179.7 M 0.060419
179_at 445.8 M 0.060419
1861_at 266.5 P 0.003585

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1337312_J_7.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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