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Sample GSM1337313 Query DataSets for GSM1337313
Status Public on Mar 05, 2014
Title Normal, synovial membrane patient J_12 (U133A)
Sample type RNA
Source name synovial membrane patient J_12 (normal controls)
Organism Homo sapiens
Characteristics gender: male
age: 36
clinical status: normal control
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
1007_s_at 491 P 0.003585
1053_at 158.9 M 0.05447
117_at 449.5 P 0.000388
121_at 941.8 P 0.003585
1255_g_at 52.2 A 0.267463
1294_at 679.5 P 0.000266
1316_at 159.1 P 0.007543
1320_at 14.3 A 0.697453
1405_i_at 86.3 P 0.009283
1431_at 74.4 P 0.021866
1438_at 59.1 A 0.438361
1487_at 529.5 P 0.035163
1494_f_at 218 P 0.035163
1598_g_at 4150.5 P 0.000266
160020_at 1270.8 P 0.003585
1729_at 917.1 P 0.003067
177_at 214.4 P 0.008689
1773_at 144.3 A 0.138765
179_at 510.9 A 0.107301
1861_at 270.1 P 0.002228

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.

Supplementary file Size Download File type/resource
GSM1337313_J_12.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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