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Sample GSM1337314 Query DataSets for GSM1337314
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient EB_20 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_20 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: male
age: 75
clinical status: rheumatoid arthritis
Treatment protocol NSARD, azulfidine, prednisolone
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_20
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 496.4 P 0.006532
1053_at 159 P 0.019304
117_at 216.5 P 0.001602
121_at 1028.1 P 0.017001
1255_g_at 106.9 M 0.05447
1294_at 688.9 P 0.000959
1316_at 106.1 A 0.066865
1320_at 57 A 0.52062
1405_i_at 1450.1 P 0.000762
1431_at 63.2 P 0.048995
1438_at 28.9 A 0.561639
1487_at 836.3 P 0.031336
1494_f_at 330 P 0.013092
1598_g_at 5780.3 P 0.000219
160020_at 1091.8 P 0.024711
1729_at 785.1 P 0.002228
177_at 172.9 P 0.039365
1773_at 123.3 A 0.175989
179_at 602.9 A 0.089405
1861_at 204.4 P 0.02786

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.




Supplementary file Size Download File type/resource
GSM1337314_EB_20.CEL.gz 3.7 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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