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Sample GSM1337315 Query DataSets for GSM1337315
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient EB_27 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_27 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 79
clinical status: rheumatoid arthritis
Treatment protocol NSARD, prednisolone, MTX
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_27
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 535.5 P 0.00418
1053_at 138.8 P 0.002228
117_at 294.5 P 0.000805
121_at 1270.8 P 0.002228
1255_g_at 44 A 0.204022
1294_at 539.3 P 0.000562
1316_at 119.2 P 0.00418
1320_at 34.2 A 0.52062
1405_i_at 241.8 P 0.000944
1431_at 63.9 P 0.017001
1438_at 113.6 A 0.234557
1487_at 475.7 P 0.035163
1494_f_at 174 P 0.031336
1598_g_at 3942.6 P 0.000219
160020_at 936 P 0.009985
1729_at 687.4 P 0.000805
177_at 171.6 P 0.011447
1773_at 139.2 A 0.098054
179_at 541.6 A 0.162935
1861_at 225.3 P 0.003067

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.




Supplementary file Size Download File type/resource
GSM1337315_EB_27.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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