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Sample GSM1337316 Query DataSets for GSM1337316
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient EB_30 (U133A)
Sample type RNA
Source name synovial membrane patient EB_30 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 63
clinical status: rheumatoid arthritis
Treatment protocol NSARD, prednisolone, MTX
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
1007_s_at 533.5 P 0.005643
1053_at 285.5 P 0.001892
117_at 397.5 P 0.000468
121_at 1502.4 P 0.002228
1255_g_at 92.1 A 0.11716
1294_at 625.2 P 0.000673
1316_at 132.9 P 0.019304
1320_at 20.9 A 0.541184
1405_i_at 1443.9 P 0.000491
1431_at 48.5 P 0.035163
1438_at 155.2 A 0.218983
1487_at 547.1 P 0.035163
1494_f_at 239.6 M 0.060419
1598_g_at 3660.6 P 0.000219
160020_at 841.6 P 0.008689
1729_at 621.4 P 0.000673
177_at 200.7 P 0.008689
1773_at 163.6 A 0.150527
179_at 508.7 A 0.162935
1861_at 263 P 0.017001

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.

Supplementary file Size Download File type/resource
GSM1337316_EB_30.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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