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Sample GSM1337317 Query DataSets for GSM1337317
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient EB_35 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_35 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 66
clinical status: rheumatoid arthritis
Treatment protocol NSARD, azulfidine, prednisolone, MTX
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_35
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 461.1 P 0.00418
1053_at 124.2 P 0.001141
117_at 374.3 P 0.000266
121_at 1512.8 P 0.000805
1255_g_at 69.9 A 0.081337
1294_at 704.9 P 0.000322
1316_at 111 P 0.013092
1320_at 86.7 A 0.218983
1405_i_at 1157 P 0.000491
1431_at 47.3 A 0.07383
1438_at 89.2 A 0.250724
1487_at 599.3 P 0.024711
1494_f_at 184 P 0.031336
1598_g_at 3525 P 0.000219
160020_at 581.3 P 0.008689
1729_at 787.7 P 0.000266
177_at 109.3 P 0.031336
1773_at 95.8 A 0.098054
179_at 405.3 A 0.098054
1861_at 167 P 0.017001

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.




Supplementary file Size Download File type/resource
GSM1337317_EB_35.CEL.gz 2.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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