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Sample GSM1337318 Query DataSets for GSM1337318
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient EB_40 (U133A)
Sample type RNA
Source name synovial membrane patient EB_40 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 64
clinical status: rheumatoid arthritis
Treatment protocol NSARD, prednisolone, MTX
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
1007_s_at 451.4 P 0.00418
1053_at 188.9 P 0.011447
117_at 157.8 P 0.000959
121_at 809.5 P 0.002617
1255_g_at 18.9 A 0.458816
1294_at 370.6 P 0.000388
1316_at 66.1 P 0.039365
1320_at 44.9 A 0.397994
1405_i_at 201.4 P 0.000762
1431_at 24.5 A 0.107301
1438_at 105.6 A 0.162935
1487_at 398.5 P 0.031336
1494_f_at 177.2 P 0.009985
1598_g_at 5239.3 P 0.000219
160020_at 529.1 P 0.014937
1729_at 638.1 P 0.000959
177_at 116.3 P 0.035163
1773_at 109.7 A 0.11716
179_at 584.1 A 0.07383
1861_at 196.8 P 0.002617

Total number of rows: 22283

Table truncated, full table size 592 Kbytes.

Supplementary file Size Download File type/resource
GSM1337318_EB_40.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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