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Sample GSM1337319 Query DataSets for GSM1337319
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient EB_41 (U133A)
Sample type RNA
Source name synovial membrane patient EB_41 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 63
clinical status: rheumatoid arthritis
Treatment protocol NSARD, azulfidine, prednisolone
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
1007_s_at 346.9 P 0.004863
1053_at 244.5 P 0.001141
117_at 204.7 P 0.001141
121_at 1181.4 P 0.000673
1255_g_at 45.6 A 0.234557
1294_at 641.1 P 0.000388
1316_at 110.5 P 0.011447
1320_at 49.3 A 0.397994
1405_i_at 1356.2 P 0.000944
1431_at 36.8 A 0.066865
1438_at 108.3 A 0.107301
1487_at 624.1 P 0.02786
1494_f_at 125.1 P 0.043968
1598_g_at 4259.3 P 0.000219
160020_at 855.6 P 0.005643
1729_at 743.8 P 0.000959
177_at 166.4 P 0.002617
1773_at 90.2 A 0.162935
179_at 485.4 A 0.234557
1861_at 226.6 P 0.008689

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.

Supplementary file Size Download File type/resource
GSM1337319_EB_41.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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