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Sample GSM1337320 Query DataSets for GSM1337320
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient EB_56 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_56 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 46
clinical status: rheumatoid arthritis
Treatment protocol prednisolone, MTX
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_56
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 424.3 P 0.003585
1053_at 247.3 P 0.001602
117_at 236.4 P 0.000562
121_at 958.2 P 0.000959
1255_g_at 52.1 A 0.107301
1294_at 785.4 P 0.000266
1316_at 55.4 P 0.017001
1320_at 8.2 A 0.621816
1405_i_at 1251.8 P 0.000613
1431_at 43.7 P 0.024711
1438_at 97.6 A 0.162935
1487_at 351.5 P 0.02786
1494_f_at 93.7 M 0.060419
1598_g_at 6594.8 P 0.000219
160020_at 596.5 P 0.014937
1729_at 959.7 P 0.000959
177_at 65 P 0.024711
1773_at 65.7 A 0.150527
179_at 371.7 A 0.127645
1861_at 218.1 P 0.001354

Total number of rows: 22283

Table truncated, full table size 592 Kbytes.




Supplementary file Size Download File type/resource
GSM1337320_EB_56.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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