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Sample GSM1337321 Query DataSets for GSM1337321
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient EB_74 (U133A)
Sample type RNA
Source name synovial membrane patient EB_74 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 71
clinical status: rheumatoid arthritis
Treatment protocol NSARD
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
1007_s_at 443.8 P 0.003585
1053_at 259.6 P 0.000805
117_at 279.6 P 0.000266
121_at 931.9 P 0.001602
1255_g_at 18.4 A 0.458816
1294_at 767.9 P 0.000219
1316_at 91.5 P 0.00418
1320_at 15.4 A 0.581931
1405_i_at 2367.7 P 0.000491
1431_at 51.8 P 0.024711
1438_at 117.8 P 0.035163
1487_at 467.7 P 0.043968
1494_f_at 152.2 M 0.05447
1598_g_at 4419.5 P 0.000219
160020_at 683.4 P 0.009985
1729_at 884.3 P 0.000959
177_at 144.4 P 0.004863
1773_at 141.1 P 0.043968
179_at 284.4 A 0.11716
1861_at 228.4 P 0.005643

Total number of rows: 22283

Table truncated, full table size 592 Kbytes.

Supplementary file Size Download File type/resource
GSM1337321_EB_74.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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