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Sample GSM1337323 Query DataSets for GSM1337323
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient EB_109 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_109 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 2
clinical status: rheumatoid arthritis
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_109
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 460.6 P 0.005643
1053_at 128.4 P 0.007543
117_at 328.5 P 0.001141
121_at 1091 P 0.001892
1255_g_at 133.2 A 0.081337
1294_at 794.3 P 0.000388
1316_at 68.7 P 0.013092
1320_at 15.8 A 0.561639
1405_i_at 1188.6 P 0.000944
1431_at 38.8 A 0.07383
1438_at 137.8 A 0.250724
1487_at 622.6 P 0.035163
1494_f_at 238.9 P 0.039365
1598_g_at 3417.6 P 0.000219
160020_at 907.4 P 0.009985
1729_at 723.2 P 0.000805
177_at 191.3 P 0.017001
1773_at 132.3 A 0.11716
179_at 494.3 A 0.162935
1861_at 258 P 0.013092

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1337323_EB_109.CEL.gz 2.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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