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Sample GSM1337324 Query DataSets for GSM1337324
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient EB_110 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_110 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: male
age: 47
clinical status: rheumatoid arthritis
Treatment protocol NSARD, prednisolone
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_110
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 447.3 P 0.00418
1053_at 100 P 0.003585
117_at 489.9 P 0.000219
121_at 845.7 P 0.004863
1255_g_at 81.1 A 0.150527
1294_at 639.3 P 0.000322
1316_at 110.3 P 0.024711
1320_at 47.3 A 0.621816
1405_i_at 49 P 0.009283
1431_at 58.7 P 0.031336
1438_at 135.1 A 0.138765
1487_at 490.9 P 0.031336
1494_f_at 170.7 P 0.048995
1598_g_at 4678.8 P 0.000219
160020_at 918.8 P 0.006532
1729_at 655.2 P 0.000959
177_at 171 P 0.007543
1773_at 92.4 A 0.189687
179_at 494 A 0.098054
1861_at 196.3 P 0.003067

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.




Supplementary file Size Download File type/resource
GSM1337324_EB_110.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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