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Sample GSM1337327 Query DataSets for GSM1337327
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient EB_21 (U133A)
Sample type RNA
Source name synovial membrane patient EB_21 (osteoarthrisits)
Organism Homo sapiens
Characteristics gender: female
age: 77
clinical status: osteoarthritis
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
1007_s_at 639.4 P 0.005643
1053_at 200.7 P 0.019304
117_at 218.8 P 0.007543
121_at 1518.3 P 0.003067
1255_g_at 340.2 P 0.014937
1294_at 536.7 P 0.000959
1316_at 140.5 P 0.035163
1320_at 22.5 A 0.541184
1405_i_at 135 P 0.002143
1431_at 55.6 A 0.127645
1438_at 146.6 A 0.175989
1487_at 623.9 P 0.035163
1494_f_at 241.1 P 0.008689
1598_g_at 3199.2 P 0.000219
160020_at 895.1 P 0.021866
1729_at 719.4 P 0.013092
177_at 158.3 P 0.017001
1773_at 153 A 0.138765
179_at 523.8 A 0.138765
1861_at 282.8 P 0.013092

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.

Supplementary file Size Download File type/resource
GSM1337327_EB_21.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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